1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagttccttctgaaatatctattgagaatgctgttctttgttttcagccaggactttgatatactctatgatgattttagctctgtataatctgccaaaggaaacaaaaaaaacatggaatttctgaatgctaaatctcatatgatataatatctgacatgtttgtgttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATCATCGTCAGATGGAGCAATCAGACCCTGATCTCATGAAGAAAATAACAA
species | Oryza sativa |
transcript | LOC_Os10g26600.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCAT GGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATEST: gi|32948243|gb|BP184815.1|BP184815
genomic: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCATgtgagttcct ... gttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
EST: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCAT GGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATEST: gi|9865393|gb|AU101143.1|AU101143
genomic: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCATgtgagttcct ... gttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
EST: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCAT GGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATEST: gi|86873362|gb|CI341587.1|CI341587
genomic: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCATgtgagttcct ... gttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
EST: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCAT GGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATEST: gi|86868558|gb|CI343130.1|CI343130
genomic: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCATgtgagttcct ... gttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
EST: GCCATCAAGTACTCCAT GGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATEST: gi|86602955|gb|CI357319.1|CI357319
genomic: GCCATCAAGTACTCCATgtgagttcct ... gttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
EST: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCAT GGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATEST: gi|88258855|gb|CI359245.1|CI359245
genomic: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCATgtgagttcct ... gttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
EST: ACTGCTCAGGAGGCCATCAAGTACTCCAT GGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATEST: gi|87032133|gb|CI362213.1|CI362213
genomic: ACTGCTCAGGAGGCCATCAAGTACTCCATgtgagttcct ... gttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
EST: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCAT TGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATEST: gi|3761255|gb|C98503.1|C98503
genomic: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCATgtgagttcct ... gttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
EST: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCAT GGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATEST: gi|88257733|gb|CI360319.1|CI360319
genomic: AACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCATgtgagttcct ... gttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
EST: GGCAACTGCTCAGGAGGCCATCAAGTACTCCAT GGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
genomic: GGCAACTGCTCAGGAGGCCATCAAGTACTCCATgtgagttcct ... gttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTAT
ttctgaatgctaaatctcatatgatataatatctgacatgtttgtgttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATCATCGTCAGATGGAGCAATCAGACCCTGATCTCATGAAGAAAATAACAA
ttatttc CT-rich tract
taaatctcatatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttccttctgaaatatctattgagaatgctgttctttgttttcagccaggactttgatatactctatgatgattttagctctgtataatctgccaaaggaaacaaaaaaaacatggaatttctgaatgctaaatctcatatgatataatatctgacatgtttgtgttatttcagGGATCTTTATGCTGAATATATCCTGCACAGCCTGAGGCGCTAATTAATTATCATCGTCAGATGGAGCAATCAGACCCTGATCTCATGAAGAAAATAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA