1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aagattttgggtgcttatttgggtatagctattgttcctcatatatttaagtatccatgtaattgatgctgaacacatgcatgtttttttttatgttcagGGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGAGCGTCGTGCAGATAG
species | Oryza sativa |
transcript | LOC_Os10g02630.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAGAATTGGTGGTGAAAATGCTGAACAGAAGCTCTCCACTAG GGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGAEST: gi|29663368|gb|CB659643.1|CB659643
genomic: GCAGAATTGGTGGTGAAAATGCTGAACAGAAGCTCTCCACTAGgtatatttat ... ttatgttcagGGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGA
EST: GGATCAAGCAGAATTGGTGGTGAAAATGCTGAACAGAAGCTCTCCACTAG GGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTATGAGAGATGAEST: gi|29636823|gb|CB641832.1|CB641832
genomic: GGATCAAGCAGAATTGGTGGTGAAAATGCTGAACAGAAGCTCTCCACTAGgtatatttat ... ttatgttcagGGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGA
EST: GGATCAAGCAGAATTGGTGGTGAAAATGCTGAACAGAAGCTCTCCACTAG GGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGAEST: gi|29684125|gb|CB680400.1|CB680400
genomic: GGATCAAGCAGAATTGGTGGTGAAAATGCTGAACAGAAGCTCTCCACTAGgtatatttat ... ttatgttcagGGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGA
EST: GGATCAAGCAGAATTGGTGGTGAAAATGCTGAACAGAAGCTCTCCACTAG GGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTANGAGAGATGAEST: gi|218480688|gb|FG945062.1|FG945062
genomic: GGATCAAGCAGAATTGGTGGTGAAAATGCTGAACAGAAGCTCTCCACTAGgtatatttat ... ttatgttcagGGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGA
EST: GGATCAAGCAGAATTGGTGGTGAAAATGCTGAACAGAAGCTCTCCACTAG GGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGA
genomic: GGATCAAGCAGAATTGGTGGTGAAAATGCTGAACAGAAGCTCTCCACTAGgtatatttat ... ttatgttcagGGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGA
tttaagtatccatgtaattgatgctgaacacatgcatgtttttttttatgttcagGGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGAGCGTCGTGCAGATAG
aattgat putative branch site (score: 43)
tttttttttatgttc putative PPT
atgtttttttttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagattttgggtgcttatttgggtatagctattgttcctcatatatttaagtatccatgtaattgatgctgaacacatgcatgtttttttttatgttcagGGATCAGCAGCACGCTGGACGCCCAAGATCGGAGGAGCCTAGGAGAGATGAGCGTCGTGCAGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - -ggtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - atccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca