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gtaagtgtgcctgttgatcacttgatcttgccctggctcccatcgtttgattctcttgctattttcatccattaatgattgattgtattttcatcaattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACA
species | Oryza sativa |
transcript | LOC_Os09g32680.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGACATAACTCTGTGGTTTGAAGAGCTC-GTGTTGACATGAACATT GTCAAGAATATCTCGATGGAAATTT-GGACTTCTATGACACCTACA-GATTEST: gi|24468776|gb|CA305725.1|CA305725
genomic: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTgtaagtgtgc ... caattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATT
EST: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATT GTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATTEST: gi|86493556|gb|CI136189.1|CI136189
genomic: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTgtaagtgtgc ... caattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATT
EST: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATT GTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATTEST: gi|29660228|gb|CB656503.1|CB656503
genomic: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTgtaagtgtgc ... caattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATT
EST: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATT GTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATTEST: gi|29660227|gb|CB656502.1|CB656502
genomic: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTgtaagtgtgc ... caattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATT
EST: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATT GTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATTEST: gi|218503593|gb|FG957186.1|FG957186
genomic: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTgtaagtgtgc ... caattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATT
EST: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATT GTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATTEST: gi|88833089|gb|CI369979.1|CI369979
genomic: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTgtaagtgtgc ... caattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATT
EST: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATT GTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATTEST: gi|88258947|gb|CI363240.1|CI363240
genomic: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTgtaagtgtgc ... caattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATT
EST: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATT GTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATTEST: gi|27547661|gb|CA765583.2|CA765583
genomic: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTgtaagtgtgc ... caattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATT
EST: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATT GTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACNAGGAT
genomic: ACAAGGACATAACTCTGTGGTTTGAAGAGCTCCGTGTTGACATGAACATTgtaagtgtgc ... caattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAG-AT
attctcttgctattttcatccattaatgattgattgtattttcatcaattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACA
ttttcatc CT-rich tract
attaatgattgattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtgcctgttgatcacttgatcttgccctggctcccatcgtttgattctcttgctattttcatccattaatgattgattgtattttcatcaattctcagGTCAAGAATATCTCGATGGAAATTTTGGACTTCTATGACACCTACAAGATTGATCCTCAAAGAGGGCTCCCAGAGGACAAAATAGCCCCTGTGATGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA