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gtaagtccttggattcgtattttccaaatgttttcctcttgatttctcgttgatcagcgttcgcgaagatttctcgttgatcaacctttcatggcgcttttcagGTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCTGCACGCCTTCCGTTGGATGCCGGTTTTGAG
species | Oryza sativa |
transcript | LOC_Os09g28570.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGAT GTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCTEST: gi|58688798|gb|CK077485.1|CK077485
genomic: CACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGATgtaagtcctt ... cgcttttcagGTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCT
EST: CACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGAT GTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCT
genomic: CACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGATgtaagtcctt ... cgcttttcagGTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCT
ttgatcagcgttcgcgaagatttctcgttgatcaacctttcatggcgcttttcagGTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCTGCACGCCTTCCGTTGGATGCCGGTTTTGAG
cgttgat putative branch site (score: 5)
cgcttttc putative PPT
aagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccttggattcgtattttccaaatgttttcctcttgatttctcgttgatcagcgttcgcgaagatttctcgttgatcaacctttcatggcgcttttcagGTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCTGCACGCCTTCCGTTGGATGCCGGTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC