1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttttctcatactgctttccttaaaaataaaaaaaaaataaaaaacctcactgactggccaattcatttgcagCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATTCAGGAAAACCAAGCTGAGTTCCTCCACTTAATCAATGAACCAGCTGAGG
species | Oryza sativa |
transcript | LOC_Os09g24200.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAG CCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATTEST: gi|218493918|gb|FG945281.1|FG945281
genomic: AATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGgtttttctca ... tcatttgcagCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATT
EST: AATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAG CCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATTEST: gi|2797172|gb|AA750466.1|AA750466
genomic: AATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGgtttttctca ... tcatttgcagCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATT
EST: -ATTCCGAACCTTGCTTTCTTTAGTGC-AGCCAATCCTCAAATTTTACAG CCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATT
genomic: AATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGgtttttctca ... tcatttgcagCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATT
ccttaaaaataaaaaaaaaataaaaaacctcactgactggccaattcatttgcagCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATTCAGGAAAACCAAGCTGAGTTCCTCCACTTAATCAATGAACCAGCTGAGG
cactgac putative branch site (score: 2)
ttcattt putative PPT
aaaataaaaaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttctcatactgctttccttaaaaataaaaaaaaaataaaaaacctcactgactggccaattcatttgcagCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATTCAGGAAAACCAAGCTGAGTTCCTCCACTTAATCAATGAACCAGCTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA