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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctctttttttttcttcttttacctatataattctagataactgacatcacaaaagatggtaacattccccttttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACAATAACACCGCAAACTCCTACAGCGTGAGACCGACCGGGTTCGAGACTGT

Basic information

species Oryza sativa
transcript LOC_Os09g13870.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88220376|gb|CI219936.1|CI219936
EST:     CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|33666578|gb|CF297545.1|CF297545
EST:     CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|86419417|gb|CI054218.1|CI054218
EST:     TTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: TTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|29642304|gb|CB647311.1|CB647311
EST:     CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|29640277|gb|CB645286.1|CB645286
EST:     CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|29641223|gb|CB646230.1|CB646230
EST:     CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|86831459|gb|CI299517.1|CI299517
EST:     TTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: TTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|29642639|gb|CB647646.1|CB647646
EST:     CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|88248838|gb|CI247922.1|CI247922
EST:     TTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: TTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|89194681|gb|CI117118.1|CI117118
EST:     TGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: TGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|86489811|gb|CI132444.1|CI132444
EST:     AATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: AATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|29671234|gb|CB667509.1|CB667509
EST:     CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|86833628|gb|CI337202.1|CI337202
EST:     TGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: TGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|88984260|gb|CI020176.1|CI020176
EST:     CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|89186756|gb|CI052169.1|CI052169
EST:     CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
EST: gi|8858798|gb|AU096116.1|AU096116
EST:     CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACG                         CTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA
genomic: CGCATCATTTTGTTATCTGCAATTCTTCCCATATCCTTATGACGCAGACGgtacctcttt ... ttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattctagataactgacatcacaaaagatggtaacattccccttttttttgcagCTTTCTGGCCTCATGCATACACCTTCCAGCTAGCGGAGGCCTCGCGCAACAATAACACCGCAAACTCCTACAGCGTGAGACCGACCGGGTTCGAGACTGT
                             tggtaac  putative branch site (score: 2)
                                   cattcccctttttttt  CT-rich tract
                                           tttttttt  TA-rich tract