1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacatattgaacaagccatatagtcttgttttgcatgaaccgtatccagggctgaccagttattgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG
species | Oryza sativa |
transcript | LOC_Os08g44400.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGEST: gi|58590549|gb|CF988857.1|CF988857
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: ACTATTACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTEST: gi|86872687|gb|CI341897.1|CI341897
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCT
EST: ACTATAACACCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGEST: gi|33821435|gb|CF336529.1|CF336529
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: AGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGEST: gi|29687876|gb|CB684151.1|CB684151
genomic: AGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGEST: gi|58589659|gb|CF987967.1|CF987967
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: GCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGEST: gi|38478016|gb|CF962149.1|CF962149
genomic: GCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: ACTATAAGAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGEST: gi|58593409|gb|CF991717.1|CF991717
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGEST: gi|88996530|gb|CI260034.1|CI260034
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGEST: gi|27548923|gb|CA767585.2|CA767585
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGEST: gi|12623212|gb|AU173425.1|AU173425
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: ACAACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGEST: gi|29685102|gb|CB681377.1|CB681377
genomic: ACAACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
atatagtcttgttttgcatgaaccgtatccagggctgaccagttattgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG
ggctgac putative branch site (score: 3)
ttattgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatattgaacaagccatatagtcttgttttgcatgaaccgtatccagggctgaccagttattgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGGGCATATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG