1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgtccggtttctgttcatctttcagattctgctctatctgctacatttgttgcgtgatgattgtatttcaggctattgtccatttgagtcaccctaattagcaactgaaccttctttcgagcttgttcttgcttataccttcgaattagctgaacatttcaaatctgcatgtgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACGTGGCCGCCTTCCCGATGAAGCTATACAATGAGATTAGGAGAGTAGAGC
species | Oryza sativa |
transcript | LOC_Os08g44340.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAG ACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACEST: gi|218482645|gb|FG946342.1|FG946342
genomic: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
EST: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATAAAG ACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACEST: gi|33793845|gb|CF322810.1|CF322810
genomic: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
EST: CTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAG ACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACEST: gi|86494248|gb|CI136881.1|CI136881
genomic: CTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
EST: GGTGGAATCAAG ACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACEST: gi|33691642|gb|CF319881.1|CF319881
genomic: GGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
EST: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAG ACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACEST: gi|33794498|gb|CF323136.1|CF323136
genomic: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
EST: AGGGTGGAATCAAG ACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACEST: gi|33681535|gb|CF309774.1|CF309774
genomic: AGGGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
EST: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAG ACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACEST: gi|38480742|gb|CF964831.1|CF964831
genomic: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
EST: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATAAAG ACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACEST: gi|87035169|gb|CI189791.1|CI189791
genomic: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
EST: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAG ACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACEST: gi|218492958|gb|FG966645.1|FG966645
genomic: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
EST: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATAAAG ACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACEST: gi|29636699|gb|CB641708.1|CB641708
genomic: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
EST: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAG CCTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCTGAC
genomic: TGACTCATCTCTTCAAGGGTCAAGTTGCAGAGGAGAAGGGTGGAATCAAGgtttgtccgg ... tgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGAC
tcttgcttataccttcgaattagctgaacatttcaaatctgcatgtgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACGTGGCCGCCTTCCCGATGAAGCTATACAATGAGATTAGGAGAGTAGAGC
tgtcttcc CT-rich tract
atttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccggtttctgttcatctttcagattctgctctatctgctacatttgttgcgtgatgattgtatttcaggctattgtccatttgagtcaccctaattagcaactgaaccttctttcgagcttgttcttgcttataccttcgaattagctgaacatttcaaatctgcatgtgtcttccagACTGATGCATTCTTCGAAACGAGCGTTCCTGGTGTATACGCCATTGCCGACGTGGCCGCCTTCCCGATGAAGCTATACAATGAGATTAGGAGAGTAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA