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gtacgtatataatatgaaaatagcttctcccactgttgcttgaagatattattaacatctaattgacaataaagaaaaacatctgagttaaaaattattaccatgttgggaagtgtaatatgcaaattcatgctagtttatgcattactctatgagcttatgtatgtcatgtgcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATTCGCGGTAACAGTTGACTCTGCGACAAGCGTGACAATCCGGGAGAGGGA
species | Oryza sativa |
transcript | LOC_Os08g42560.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|86477656|gb|CI120289.1|CI120289
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACCACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|4715425|gb|AU056542.1|AU056542
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CEST: gi|4715425|gb|AU056542.1|AU056542
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcag-
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CEST: gi|27576165|gb|CA998859.1|CA998859
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcag-
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|87041266|gb|CI195888.1|CI195888
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: TGATAAAGCATTAACGACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|89176277|gb|CI043298.1|CI043298
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|88269105|gb|CI380403.1|CI380403
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACAGTACTG CCATTTCTATTGGGAGGAGTTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|58611439|gb|CK039151.1|CK039151
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|86844757|gb|CI338672.1|CI338672
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: ATTATTGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|218494535|gb|FG968925.1|FG968925
genomic: ATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGEST: gi|33682737|gb|CF310976.1|CF310976
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTG
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|33677376|gb|CF305615.1|CF305615
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTEST: gi|2797213|gb|AA750507.1|AA750507
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATT
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|86496384|gb|CI139017.1|CI139017
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|58601879|gb|CK012407.1|CK012407
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: GCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATEST: gi|33682738|gb|CF310977.1|CF310977
genomic: GCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
EST: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTG CCATTTCTATTGGGAAGGAGGTATGCAAGGACAGATGEST: gi|87041889|gb|CI196511.1|CI196511
genomic: TGATAAAGCATTAACAACAGCAGGCATCTCGCATATTATTGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGA-GGAGGTATGCAAGGACAGATG
EST: TGACACTACTG CCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
genomic: TGACACTACTGgtacgtatat ... gcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCAT
tcatgctagtttatgcattactctatgagcttatgtatgtcatgtgcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATTCGCGGTAACAGTTGACTCTGCGACAAGCGTGACAATCCGGGAGAGGGA
tagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtatataatatgaaaatagcttctcccactgttgcttgaagatattattaacatctaattgacaataaagaaaaacatctgagttaaaaattattaccatgttgggaagtgtaatatgcaaattcatgctagtttatgcattactctatgagcttatgtatgtcatgtgcttgtgcagCCATTTCTATTGGGAGGAGGTATGCAAGGACAGATGAGATCGGTGTTCCATTCGCGGTAACAGTTGACTCTGCGACAAGCGTGACAATCCGGGAGAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG