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gtgtttatatttctaaccgcagttcttatcatagcgatatattatagtgcgtgaataaattgaaactatagtcccttagcggattcagttggccctttttgcaagcagGGCTTTCACTGATGGAGTACCCTGGAGTGAAACCCATGGACCCTGCCTACGCGCTGCCGCTGGATGTTGTCAACCGGATTTTCTTGAGAAAAGAACATTA
species | Oryza sativa |
transcript | LOC_Os08g40140.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGACCAGATAATGCGGTAGATATCTACCACACATACTTNGGAGTTGCAG GGCTTTCACTGATGGAGTACCCTGGAGTGAAACCCATGGACCCTGCCTACGEST: gi|58594582|gb|CF992890.1|CF992890
genomic: TAGACCAGATAATGCGGTAGATATCTACCACACATACTTTGGAGTTGCAGgtgtttatat ... ttgcaagcagGGCTTTCACTGATGGAGTACCCTGGAGTGAAACCCATGGACCCTGCCTACG
EST: TAGACCAGATAATGCGGTAGATATCTACCACACATACTTTGGAGTTGCAG GGCTTTCACTGATGGANGTACCCTGGAGTGAAACCCATGGACCCTGCCTACEST: gi|88220590|gb|CI220150.1|CI220150
genomic: TAGACCAGATAATGCGGTAGATATCTACCACACATACTTTGGAGTTGCAGgtgtttatat ... ttgcaagcagGGCTTTCACTGATGGA-GTACCCTGGAGTGAAACCCATGGACCCTGCCTAC
EST: TAGACCAGATAATGCGGTAGATATCTACCACACATACTTTGGAGTTGCAG GGCTTTCACTGATGGAGTACCCTGGAGTGAAACCCATGGACCCTGCCTACGEST: gi|88227738|gb|CI227218.1|CI227218
genomic: TAGACCAGATAATGCGGTAGATATCTACCACACATACTTTGGAGTTGCAGgtgtttatat ... ttgcaagcagGGCTTTCACTGATGGAGTACCCTGGAGTGAAACCCATGGACCCTGCCTACG
EST: TAGACCAGATAATGCGGTAGATATCTACCACACATACTTTGGAGTTGCAG GGCTTTCACTGATGGAGTACCCTGGAGTGAAACCCATGGACCCTGCCTACG
genomic: TAGACCAGATAATGCGGTAGATATCTACCACACATACTTTGGAGTTGCAGgtgtttatat ... ttgcaagcagGGCTTTCACTGATGGAGTACCCTGGAGTGAAACCCATGGACCCTGCCTACG
aataaattgaaactatagtcccttagcggattcagttggccctttttgcaagcagGGCTTTCACTGATGGAGTACCCTGGAGTGAAACCCATGGACCCTGCCTACGCGCTGCCGCTGGATGTTGTCAACCGGATTTTCTTGAGAAAAGAACATTA
ccctttttgc CT-rich tract
aaactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttatatttctaaccgcagttcttatcatagcgatatattatagtgcgtgaataaattgaaactatagtcccttagcggattcagttggccctttttgcaagcagGGCTTTCACTGATGGAGTACCCTGGAGTGAAACCCATGGACCCTGCCTACGCGCTGCCGCTGGATGTTGTCAACCGGATTTTCTTGAGAAAAGAACATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC