1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agttatctgccaagagatgaagagaagttgaatcataatggttgtttactcgtttggcattgcacccatgtcagtgtattaatactcttgtaacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACTGCCAGGAGAGGAGGCCGAGGTGCTTTCATGTAGATTTTCCCCCTTCTG
species | Oryza sativa |
transcript | LOC_Os08g39070.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|86256930|gb|CI061693.1|CI061693
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|87035572|gb|CI190194.1|CI190194
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|58600992|gb|CK011520.1|CK011520
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|86545262|gb|CI185468.1|CI185468
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: ATGACACCCTCCTCATGACGTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|16578082|gb|BI812177.1|BI812177
genomic: ATGACACCCTCCTCATGAC-TTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: CATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAEST: gi|58677484|gb|CK066171.1|CK066171
genomic: -ATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCAC-AATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGA
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|86603350|gb|CI112110.1|CI112110
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|88964490|gb|CI055186.1|CI055186
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|88490846|gb|CI428118.1|CI428118
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|88960516|gb|CI006477.1|CI006477
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|18385597|gb|BM418796.1|BM418796
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: NATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACNATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|86436263|gb|CI117985.1|CI117985
genomic: -ATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: CTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|86599885|gb|CI256047.1|CI256047
genomic: CTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|88512741|gb|CI440247.1|CI440247
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: TTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|88201787|gb|CI202142.1|CI202142
genomic: TTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|86593400|gb|CI258040.1|CI258040
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|87035583|gb|CI190205.1|CI190205
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|86545864|gb|CI186070.1|CI186070
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: CCTCCTCATGACTTACCTGTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|86489099|gb|CI131732.1|CI131732
genomic: CCTCCTCATGACTTACCT-TGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|16578081|gb|BI812176.1|BI812176
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: CATGACACCCTCCTCATGACTTACCTTGCTATGTTCCCTAACTGTTCAAG CCCAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|86251601|gb|CI016890.1|CI016890
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACEST: gi|27546787|gb|CA764823.2|CA764823
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
EST: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAG CACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
genomic: AATGACACCCTCCTCATGACTTACCTTGCTATGTTCACTAACTGTTCAAGgtatgccccc ... taacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGAC
ttactcgtttggcattgcacccatgtcagtgtattaatactcttgtaacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACTGCCAGGAGAGGAGGCCGAGGTGCTTTCATGTAGATTTTCCCCCTTCTG
ttgtaac putative branch site (score: 6)
ctcttgt CT-rich tract
tgtattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttatctgccaagagatgaagagaagttgaatcataatggttgtttactcgtttggcattgcacccatgtcagtgtattaatactcttgtaacttgcagCACAATGAATGAGCTGGTCGAGAAGTTTAACGCGACATACGAGAGGTCGACTGCCAGGAGAGGAGGCCGAGGTGCTTTCATGTAGATTTTCCCCCTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - -tgccaag
- - - - - - - - - gaagagaa
- - - - - - - - - - - - - - tgaatca
- - - - - - - - - - - - - - - - - - -atggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtc