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gtacgtaatctgccttttccccttcataacatctttgactcttagagatgaatatccatctcacttggagataccatgtgcagTTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAGAAGATGGGTTGCTGGTTCTGGTGGTGTGCAG
species | Oryza sativa |
transcript | LOC_Os08g36994.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAATTAGTCAATCAACAAGCAATCAGTTCTACTTCCAATTCTTAACATA TTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAGEST: gi|29622673|gb|CB627684.1|CB627684
genomic: GCAATTAGTCAATCAACAAGCAATCAGTTCTACTTCCAATTCTTAACATAgtacgtaatc ... ccatgtgcagTTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAG
EST: GCAATTAGTCAATCAACAAGCAATCAGTTCTACTTCCAATTCTTAACATA TTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAGEST: gi|58656399|gb|CK045079.1|CK045079
genomic: GCAATTAGTCAATCAACAAGCAATCAGTTCTACTTCCAATTCTTAACATAgtacgtaatc ... ccatgtgcagTTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAG
EST: GCAATTAGTCAATCAACAAGCAATCAGTTCTACTTCCAATTCTTAACATA TTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAGEST: gi|396941631|gb|HO188288.1|HO188288
genomic: GCAATTAGTCAATCAACAAGCAATCAGTTCTACTTCCAATTCTTAACATAgtacgtaatc ... ccatgtgcagTTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAG
EST: GCAATTAGTCAATCAACAAGCAATCAGTTCTACTTCCAATTCTTAACATA TTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAG
genomic: GCAATTAGTCAATCAACAAGCAATCAGTTCTACTTCCAATTCTTAACATAgtacgtaatc ... ccatgtgcagTTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAG
acatctttgactcttagagatgaatatccatctcacttggagataccatgtgcagTTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAGAAGATGGGTTGCTGGTTCTGGTGGTGTGCAG
atgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtaatctgccttttccccttcataacatctttgactcttagagatgaatatccatctcacttggagataccatgtgcagTTATCAGCATCATGAGGGTCAGATGAGATTACGAGCTACTACACTTTCCAGAAGATGGGTTGCTGGTTCTGGTGGTGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG