1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatatttttctgtttgttagttaccccgaactgtcaaagttgattgttcatcaatagatgacaaaaatcccttctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGTAGTCAAAGATTGGTTGCGCATAACACCATCCAG
species | Oryza sativa |
transcript | LOC_Os08g34750.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAG AGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAEST: gi|29624696|gb|CB629707.1|CB629707
genomic: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAGgtatattttt ... ctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGA
EST: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAG AGGAGATGATTAGAGGCCTTACACAAGTACCATGGGAACGTGTTGATGTGAEST: gi|27577773|gb|CB000468.1|CB000468
genomic: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAGgtatattttt ... ctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGA
EST: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAG AGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAEST: gi|29677871|gb|CB674146.1|CB674146
genomic: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAGgtatattttt ... ctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGA
EST: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAG AGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAEST: gi|29678642|gb|CB674917.1|CB674917
genomic: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAGgtatattttt ... ctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGA
EST: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAG AGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAEST: gi|33683118|gb|CF311357.1|CF311357
genomic: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAGgtatattttt ... ctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGA
EST: ACGAACCAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAG AGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAEST: gi|29674047|gb|CB670322.1|CB670322
genomic: ACGAAC-AGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAGgtatattttt ... ctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGA
EST: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAG AGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAEST: gi|88228444|gb|CI227924.1|CI227924
genomic: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAGgtatattttt ... ctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGA
EST: AACGTACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAG AGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAEST: gi|55410008|gb|CV722384.1|CV722384
genomic: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAGgtatattttt ... ctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGA
EST: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAG AGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGA
genomic: AACGAACAGTAATGAAGCAGAAGCTCGTTCTGATCTTTATGACCCAGAAGgtatattttt ... ctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGA
aactgtcaaagttgattgttcatcaatagatgacaaaaatcccttctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGTAGTCAAAGATTGGTTGCGCATAACACCATCCAG
agttgat putative branch site (score: 4)
tcccttctatttgc putative PPT
acaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatttttctgtttgttagttaccccgaactgtcaaagttgattgttcatcaatagatgacaaaaatcccttctatttgcagAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGTAGTCAAAGATTGGTTGCGCATAACACCATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT