1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaaatatttgcacatattttcctcttgtgaaaatgtcaaagcagagctaggtgatatattttttgcagttctcaatgtttgctcccttaaaccttttcagGCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGAGTGGAG
species | Oryza sativa |
transcript | LOC_Os08g32850.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAG GCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGAEST: gi|29640037|gb|CB645046.1|CB645046
genomic: TTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAGgtaaaaactt ... accttttcagGCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGA
EST: TTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAG GCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGAEST: gi|29640075|gb|CB645084.1|CB645084
genomic: TTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAGgtaaaaactt ... accttttcagGCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGA
EST: TTTTGTTTATGTGGCCAACGGCTAGGATATCTGTCATGGGTGGCATCCAG GCAGTTGGTGTCCTTGCTCAAATAGAGAAGAACACCAGAAAAAGACAAGGAEST: gi|31818575|gb|CD645562.1|CD645562
genomic: TTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAGgtaaaaactt ... accttttcagGCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGA
EST: TTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAG GCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGAEST: gi|29639362|gb|CB644371.1|CB644371
genomic: TTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAGgtaaaaactt ... accttttcagGCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGA
EST: TTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAG GCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGA
genomic: TTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAGgtaaaaactt ... accttttcagGCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGA
gctaggtgatatattttttgcagttctcaatgtttgctcccttaaaccttttcagGCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGAGTGGAG
ccttttc CT-rich tract
tgatatatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatatttgcacatattttcctcttgtgaaaatgtcaaagcagagctaggtgatatattttttgcagttctcaatgtttgctcccttaaaccttttcagGCAGCTGGTGTCCTTGCTCAAATAGAGAAGAACAACAGAAAAAGACAAGGAGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - -gcacata
- - - - - - - - - - - -cttgtga
- - - - - - - - - - - - - - - - - - -aaagcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaatg