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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctccttaaggagattatgtgctgacttacaaattaagattctgaactttatccatccacatgtatgtttatttttcttacaaatggcactttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG

Basic information

species Oryza sativa
transcript LOC_Os08g26870.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g26870.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G006468_T04 (Zea mays), 3'ss of exon 8
---tttctccttaaggagattatgtgctgacttacaaattaagattctgaacttta-tccatccacatgtatgtttatttttcttacaaatggcactttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG
     | || |  |   || ||| | |||   | ||  ||||||| | |||||  | |  ||  |  |||||||| |||||| |||||  ||    ||| | ||||| ||||| ||| ||| ||| ||||||||||||||||||||| |   |||||||||||||||||| || |||||||||||||| |||||||
actggtttcgtacattcgagtatattctg---tgcat-ttaagatccagaactccaatatatgaatctgtatgttaatttttgttacacttgcatttttgttagACCCGATGGACAGGCATCTGTTGAGGCTCAAGAGTTTGGATTGGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG

upper sequence: LOC_Os08g26870.3 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G053531_T02 (Zea mays), 3'ss of exon 8
-------------------------------------------------------tttctccttaaggagattatgtgctgacttacaaattaagattctgaactttatc-catccacatgtatgtt-tatttttcttacaaatggcactttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG
                                                       ||| |  || |   |         |  |||      ||| |         || |   ||  |  | |||||| | |||||||||||  || || ||| | ||||||||||| ||||||||||| |||||||||||||||||| || |  |||||||||||||||||||| | |||||||||||||| |||||||
gtattctagaaggcgaataagaattatacaatggttgtaggatttcttttaaatattttttgttgatctgcccccaactttgcttggggtctaaaagaagctttgttgttatatgaatctatatgttatttttttcttacacttg-catttttttagACCTGATGGACAGCCATGTGTGGAGGCTCAAGAGTTTGGACTGGTGAGGAACATGCTCATTGCAGCTATCGAAGAGAGATACAAGGATGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30228242|gb|CB966133.1|CB966133
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88537216|gb|CI465038.1|CI465038
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86826588|gb|CI364159.1|CI364159
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86839245|gb|CI331510.1|CI331510
EST:     GCGATAGCAGCCCGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCACCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86428772|gb|CI075453.1|CI075453
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88833575|gb|CI077056.1|CI077056
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88458762|gb|CI558423.1|CI558423
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|89163031|gb|CI099921.1|CI099921
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86841671|gb|CI337368.1|CI337368
EST:     GCGATAGCACCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86870797|gb|CI323841.1|CI323841
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCACCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|27920662|gb|CB096470.1|CB096470
EST:     GATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAG
genomic: GATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86541133|gb|CI181339.1|CI181339
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86866657|gb|CI343508.1|CI343508
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|89182212|gb|CI113581.1|CI113581
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|58610870|gb|CK038582.1|CK038582
EST:     TTTACAGAACTTGACAG                         ACCTGATGGTCAGCCATGTTTCGAGGCTCAAGAGTTTGGATTGATCCGGTA
genomic: TTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86600740|gb|CI356497.1|CI356497
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88219539|gb|CI219099.1|CI219099
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86845296|gb|CI340393.1|CI340393
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACATAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86873846|gb|CI334378.1|CI334378
EST:     CGATAGCAGGCCGGCATGTCTGACGGGTTTTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: CGATAGCA-GCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88220033|gb|CI219593.1|CI219593
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86545503|gb|CI185709.1|CI185709
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86486764|gb|CI129397.1|CI129397
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88843827|gb|CI011085.1|CI011085
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86424485|gb|CI063246.1|CI063246
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86836286|gb|CI348240.1|CI348240
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88258758|gb|CI361344.1|CI361344
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86881486|gb|CI322571.1|CI322571
EST:     GCGATAGCAGCCGGCATTTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|29667115|gb|CB663390.1|CB663390
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|89194098|gb|CI116535.1|CI116535
EST:     GCGATAGCAGCCGGCATGTCTGACGGGGTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86535591|gb|CI175797.1|CI175797
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|13806781|gb|AU181664.1|AU181664
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88221407|gb|CI221363.1|CI221363
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCCCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86840712|gb|CI333955.1|CI333955
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88521611|gb|CI449315.1|CI449315
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|58591729|gb|CF990037.1|CF990037
EST:     CTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: CTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|33656426|gb|CF279040.1|CF279040
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88525176|gb|CI454158.1|CI454158
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTNTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|89165034|gb|CI102122.1|CI102122
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88844616|gb|CI021191.1|CI021191
EST:     GCGATAGCAGCCGGCATGCCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88852227|gb|CI373995.1|CI373995
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86835533|gb|CI347990.1|CI347990
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|58613072|gb|CK040784.1|CK040784
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86535529|gb|CI175735.1|CI175735
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|30228832|gb|CB966723.1|CB966723
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86853630|gb|CI330481.1|CI330481
EST:     GCGGTAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|89182723|gb|CI114092.1|CI114092
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|23514436|gb|BU673639.1|BU673639
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|89175204|gb|CI111723.1|CI111723
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86522948|gb|CI163154.1|CI163154
EST:     GCGATAGCAGCCGGCATATCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88257497|gb|CI359885.1|CI359885
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88217099|gb|CI216948.1|CI216948
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCGTGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88442051|gb|CI560292.1|CI560292
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86870982|gb|CI326801.1|CI326801
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|163923065|gb|EG712786.1|EG712786
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86841645|gb|CI337352.1|CI337352
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86884643|gb|CI313022.1|CI313022
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGAT-GGCAACCATG-GTCGAGGCTCAAGATTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86418718|gb|CI053519.1|CI053519
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88833609|gb|CI077090.1|CI077090
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88256230|gb|CI358618.1|CI358618
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|58030519|gb|CX728062.1|CX728062
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGCCAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88429758|gb|CI559983.1|CI559983
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86433857|gb|CI094200.1|CI094200
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|89161725|gb|CI100885.1|CI100885
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86864365|gb|CI334112.1|CI334112
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|12405243|gb|AU166844.1|AU166844
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88274075|gb|CI394481.1|CI394481
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|86867122|gb|CI343891.1|CI343891
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|15855809|gb|BI808621.1|BI808621
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|88437955|gb|CI536114.1|CI536114
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTTTTGTTTACAGAACTTGACAG                         ACCTGATGGGCACCCATCTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactttatccatccacatgtatgtttatttttcttacaaatggcactttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG
                               ttcttac  putative branch site (score: 2)
                                              ctttatc  putative PPT
                    tatgtttatttttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttctccttaaggagattatgtgctgacttacaaattaagattctgaactttatccatccacatgtatgtttatttttcttacaaatggcactttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAACATGCTCATTGCAGCTGTTGAAGAGAGATACAAAGATGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG