1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttatccaattgcattaagaaataacttgttatgacgctcaacctatactaacctatactattttcattggcactgcctcatatatgtttaatatttccagGTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTCCTGG
species | Oryza sativa |
transcript | LOC_Os08g23810.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTACTCCTTCGTCTCTTTGCTTCAGCACTTCCTTCCTATAATGAATCCAG GTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTCCTGEST: gi|29613728|gb|CB618741.1|CB618741
genomic: TTACTCCTTCGTCTCTTTGCTTCAGCACTTCCTTCCTATAATGAATCCAGgtagtgctta ... atatttccagGTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTCCTG
EST: TTACTCCTTCGTCTCTTTGCTTCAGCACTTCCTTCCTATAATGAATCCAG GTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTCEST: gi|29613729|gb|CB618742.1|CB618742
genomic: TTACTCCTTCGTCTCTTTGCTTCAGCACTTCCTTCCTATAATGAATCCAGgtagtgctta ... atatttccagGTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTC
EST: TTACTCCTTCGTCTCTTTGCTTCAGCACTTCCTTCCTATAATGAATCCAG GTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTCCTG
genomic: TTACTCCTTCGTCTCTTTGCTTCAGCACTTCCTTCCTATAATGAATCCAGgtagtgctta ... atatttccagGTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTCCTG
tactaacctatactattttcattggcactgcctcatatatgtttaatatttccagGTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTCCTGG
tatttcc CT-rich tract
tcatatatgtttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatccaattgcattaagaaataacttgttatgacgctcaacctatactaacctatactattttcattggcactgcctcatatatgtttaatatttccagGTGGTGCTTCCATCTCTCTAACATACATTGCATCTGAAAGGGCAATTCCTGG
- - - - ttgcatt
- - - - - - - - -gaaataa
- - - - - - - - - - - - - - - -tgacgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgcct