1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaattgtgttcatatgttcataataaccactttctgttgggtcttgatactaactagcctgttttctatttttggttttcacaatggtgtagAAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG
species | Oryza sativa |
transcript | LOC_Os08g08200.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGTTTACTGGATTAGTTTTGGCGAAGAGTATGCTGAAAAG AAAGTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGEST: gi|58687919|gb|CK076606.1|CK076606
genomic: ATGGTGTTTACTGGATTAGTTTTGGCGAAGAGTATGCTGAAAAGgtaattgtgt ... aatggtgtagAAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG
EST: TTGGGAACGGTGTTTACTGGATTAGTTTTGGCGAAGAGTATGCTGAAAAG AAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGEST: gi|58693212|gb|CK081899.1|CK081899
genomic: TTGGGAATGGTGTTTACTGGATTAGTTTTGGCGAAGAGTATGCTGAAAAGgtaattgtgt ... aatggtgtagAAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG
EST: TTGGGAACGGTGTTTACTGGATTAGTTTTGGCGAAGAGTATGCTGAAAAG AAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGEST: gi|29689085|gb|CB685360.1|CB685360
genomic: TTGGGAATGGTGTTTACTGGATTAGTTTTGGCGAAGAGTATGCTGAAAAGgtaattgtgt ... aatggtgtagAAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG
EST: TTGGGAATGGTGTTTACTGGATTAGTTTGGGCGAAGAGTATGCTGAAAAG AAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGEST: gi|86854764|gb|CI259050.1|CI259050
genomic: TTGGGAATGGTGTTTACTGGATTAGTTTTGGCGAAGAGTATGCTGAAAAGgtaattgtgt ... aatggtgtagAAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG
EST: TTGGCGAAGAGTATGCTGAAAAG AAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAGEST: gi|25801957|gb|CA757918.1|CA757918
genomic: TTGGCGAAGAGTATGCTGAAAAGgtaattgtgt ... aatggtgtagAAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG
EST: TTGGGAACGGTGTTTACTGGATTAGTTTTGGCGAAGAGTATGCTGAAAAG AAATTCCCTGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG
genomic: TTGGGAATGGTGTTTACTGGATTAGTTTTGGCGAAGAGTATGCTGAAAAGgtaattgtgt ... aatggtgtagAAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG
tgggtcttgatactaactagcctgttttctatttttggttttcacaatggtgtagAAATTCCCCGCATCCAGACCTTTCGGTATCAAATACAAGTTTCACTTAGAG
tactaac putative branch site (score: 7)
tgttttctattttt TA-rich tract