1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccttgttatcagatgtttcatatatattggcatattgcacccaatgcactagtagttgcaggcaacatggtcattatgtacctcgcacatgttttggcagGCTAAACATAAAATCGAGTCAGCAAGTGGTCCTTTGAACATGCAACTCAATCAAGTTCCGAAGATGCTTTTCATTCTGAGAAAACAATGGGCTCCTTCAG
species | Oryza sativa |
transcript | LOC_Os08g07880.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTACCTTGCTGCGGCAGTTTCTGACTTTTATGTTCCATGGGAAAGCATG GCTAAACATAAAATCGAGTCAGCAAGTGGCCCTTTGAACATGCAACTCAATEST: gi|38475745|gb|CF959878.1|CF959878
genomic: TTTACCTTGCTGCGGCAGTTTCTGACTTTTATGTTCCATGGGAAAGCATGgtaggctcta ... gttttggcagGCTAAACATAAAATCGAGTCAGCAAGTGGTCCTTTGAACATGCAACTCAAT
EST: TTTACCTTGCTGCGGCAGTTTCTGACTTTTATGTGCCATGGGAAAGCATG GCTAAACATAAAATCGAGTCAGCAAGTGGCCCTTTGAACATGCAACTCAATEST: gi|109712370|gb|CI104978.1|CI104978
genomic: TTTACCTTGCTGCGGCAGTTTCTGACTTTTATGTTCCATGGGAAAGCATGgtaggctcta ... gttttggcagGCTAAACATAAAATCGAGTCAGCAAGTGGTCCTTTGAACATGCAACTCAAT
EST: TGGGAAAGCATG GCTAAACATAAAATCGAGTCAGCAAGTGGTCCTTTGAACATGCAACTCAAT
genomic: TGGGAAAGCATGgtaggctcta ... gttttggcagGCTAAACATAAAATCGAGTCAGCAAGTGGTCCTTTGAACATGCAACTCAAT
gcactagtagttgcaggcaacatggtcattatgtacctcgcacatgttttggcagGCTAAACATAAAATCGAGTCAGCAAGTGGTCCTTTGAACATGCAACTCAATCAAGTTCCGAAGATGCTTTTCATTCTGAGAAAACAATGGGCTCCTTCAG
attatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgttatcagatgtttcatatatattggcatattgcacccaatgcactagtagttgcaggcaacatggtcattatgtacctcgcacatgttttggcagGCTAAACATAAAATCGAGTCAGCAAGTGGTCCTTTGAACATGCAACTCAATCAAGTTCCGAAGATGCTTTTCATTCTGAGAAAACAATGGGCTCCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - -tgtttca
- - - - - - - - - - - - - -tggcata
- - - - - - - - - - - - - - - - - ttgcacc
- - - - - - - - - - - - - - - - - - - - -caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtc