1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttttattaacttcagtataatcatgctatgttttcgatatgttttaatgttttatgtttcatctttcaagGTTCTTGCTAGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAACCCTTAAAGGATCAGCTTCTTGATGTGACAACAACCAATTGCACCGGCT
species | Oryza sativa |
transcript | LOC_Os08g01390.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTTTGATAATCCCTGCAGGCAGGATTGGTTTAAAGAAGAGAGGAGATAT GTTCTTGCTAGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAAEST: gi|29635302|gb|CB640311.1|CB640311
genomic: AGTTTGATAATCCCTGCAGGCAGGATTGGTTTAAAGAAGAGAGGAGATATgtatgtttta ... atctttcaagGTTCTTGCTAGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAA
EST: AGTTTGCTAATCCCTGCAGGCAGGATTGGTTTTAAGAAGAGAGGAGATAT GTTCTTGCTAGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAAEST: gi|58674380|gb|CK063066.1|CK063066
genomic: AGTTTGATAATCCCTGCAGGCAGGATTGGTTTAAAGAAGAGAGGAGATATgtatgtttta ... atctttcaagGTTCTTGCTAGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAA
EST: AGTTTGATAATCCCTGCAGGCAGGATTGGTTTAAAGAAGAGAGGAGATAT GTTCTTGCTAGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAA
genomic: AGTTTGATAATCCCTGCAGGCAGGATTGGTTTAAAGAAGAGAGGAGATATgtatgtttta ... atctttcaagGTTCTTGCTAGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAA
tataatcatgctatgttttcgatatgttttaatgttttatgtttcatctttcaagGTTCTTGCTAGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAACCCTTAAAGGATCAGCTTCTTGATGTGACAACAACCAATTGCACCGGCT
ttttaat putative branch site (score: 9)
tttcatctttc putative PPT
atatgttttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttattaacttcagtataatcatgctatgttttcgatatgttttaatgttttatgtttcatctttcaagGTTCTTGCTAGAGGTATAAAGCTTTTTTCTGAGGTTGCAAGCATGCTACAACCCTTAAAGGATCAGCTTCTTGATGTGACAACAACCAATTGCACCGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT