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...atgtaattttggaactgtattatttggactgttcaggggtcctattatatttagtcttatgtttgtagcttgccaagtaacatgctttcaaaacttccagGTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACACTTTCGGAATTGTCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCC
species | Oryza sativa |
transcript | LOC_Os08g01180.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTCAAATCCTAGG GTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACT-AGGEST: gi|38476686|gb|CF960819.1|CF960819
genomic: GTGTTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTCAAATCCTAGGgtatgcactt ... aaacttccagGTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACA
EST: GTATTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTCAAATCCTAGG GTTGCGTGGGAGCATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACAEST: gi|88262193|gb|CI365769.1|CI365769
genomic: GTGTTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTCAAATCCTAGGgtatgcactt ... aaacttccagGTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACA
EST: GTGTTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTCAAATCCTAGG TTTGCGTGGGAACATGACCAGTTCTCAAGATTTAGGGTGACTGCACTAACAEST: gi|58606681|gb|CK034714.1|CK034714
genomic: GTGTTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTCAAATCCTAGGgtatgcactt ... aaacttccagGTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACA
EST: GTATTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTCAAATCCTAGG GTTGCGTGGGAGCATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACA
genomic: GTGTTTCAGTTGGAATCAAGCACAAGAAGATTAATGTCTCAAATCCTAGGgtatgcactt ... aaacttccagGTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACA
tatatttagtcttatgtttgtagcttgccaagtaacatgctttcaaaacttccagGTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACACTTTCGGAATTGTCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCC
aagtaac putative branch site (score: 41)
cttcc putative PPT
ttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtaattttggaactgtattatttggactgttcaggggtcctattatatttagtcttatgtttgtagcttgccaagtaacatgctttcaaaacttccagGTTGCGTGGGAACATGAGCAGTTCTCAAGATTTAGGGTGACTGCACTAACACTTTCGGAATTGTCCTCTCCTCCTGACTTTTTAGAAAGCACCGGTGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgcc