1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattgtatgctcaactgattcattgtgcaactcgataaaacaaaagctccataacactgtatattaataaatttcaacatgtttttttttcagATGACTTCAAGGGGAAGGACTTGGAAATAGGTTCTCCTAGAAATTTAAACACAGCTTATCAATCCTCTCCGAATGAGAGATCCATCAAACCAACAGATAG
species | Oryza sativa |
transcript | LOC_Os07g49460.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCAAGAAACAAAAAGAAACTAATG ATGACTTCAAGGGGAAGGACTTGGAAATAGGTTCTCCTAGAAATTTAAACAEST: gi|86884330|gb|CI311723.1|CI311723
genomic: CCAAGAAACAAAAAGAAACTAATGgtattgtatg ... tttttttcagATGACTTCAAGGGGAAGGACTTGGAAATAGGTTCTCCTAGAAATTTAAACA
EST: GTTACCATGTACAAGCAACAAAAATTCCAAGAAACAAAAAGAAACTAATG ATGACTTCAAGGGGAAGGACTTGGAAATAGGTTCTCCTAGAAATTTAAACAEST: gi|33794538|gb|CF323156.1|CF323156
genomic: GTTACCATGTACAAGCAACAAAAATTCCAAGAAACAAAAAGAAACTAATGgtattgtatg ... tttttttcagATGACTTCAAGGGGAAGGACTTGGAAATAGGTTCTCCTAGAAATTTAAACA
EST: GTTACCATGTACAAGCAACAAAAATTCCAAGAAACAAAAAGAAACTAATG ATGACTTCAAGGGGAAGGACTTGGAAATAGGTTCTCCTAGAAATTTAAACAEST: gi|58611601|gb|CK039313.1|CK039313
genomic: GTTACCATGTACAAGCAACAAAAATTCCAAGAAACAAAAAGAAACTAATGgtattgtatg ... tttttttcagATGACTTCAAGGGGAAGGACTTGGAAATAGGTTCTCCTAGAAATTTAAACA
EST: GTTACCATGTACAAGCAACAAAAATTCCAAGAAACAAAAAGAAACTAATG ATGACTTCAAGGGGAAGGACTT
genomic: GTTACCATGTACAAGCAACAAAAATTCCAAGAAACAAAAAGAAACTAATGgtattgtatg ... tttttttcagATGACTTCAAGGGGAAGGACTT
aacaaaagctccataacactgtatattaataaatttcaacatgtttttttttcagATGACTTCAAGGGGAAGGACTTGGAAATAGGTTCTCCTAGAAATTTAAACACAGCTTATCAATCCTCTCCGAATGAGAGATCCATCAAACCAACAGATAG
tattaat putative branch site (score: 2)
catgtttttttttc putative PPT
actgtatattaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtatgctcaactgattcattgtgcaactcgataaaacaaaagctccataacactgtatattaataaatttcaacatgtttttttttcagATGACTTCAAGGGGAAGGACTTGGAAATAGGTTCTCCTAGAAATTTAAACACAGCTTATCAATCCTCTCCGAATGAGAGATCCATCAAACCAACAGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC