1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtttgctggccatttcattattcacgtttgtgggaaacatgaaattctgacttcttttttctcagccctcaggagaggccttggaatgattgaatttaatctaactatattatacatatgcagGAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG
species | Oryza sativa |
transcript | LOC_Os07g48200.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAAAACCTACTGTCGTGATGATTGAGGACTACGAAATTGAAGAGTATGAT GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGGEST: gi|58689987|gb|CK078674.1|CK078674
genomic: CAAAACCTACTGTCGTGATGATTGAGGACTACGAAATTGAAGAGTATGATgtaagtttgc ... acatatgcagGAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG
EST: CAAAACCTACTGTCGTGATGATTGAGGACTACGAAATTGAAGAGTATGAT GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGGEST: gi|51946086|gb|CV152427.1|CV152427
genomic: CAAAACCTACTGTCGTGATGATTGAGGACTACGAAATTGAAGAGTATGATgtaagtttgc ... acatatgcagGAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG
EST: CAAAACCTACTGTCGTGATGATTGAGGACTACNAAATTGAAGAGTATGAT GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGGEST: gi|58686025|gb|CK074712.1|CK074712
genomic: CAAAACCTACTGTCGTGATGATTGAGGACTACGAAATTGAAGAGTATGATgtaagtttgc ... acatatgcagGAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG
EST: CAAAACCTACTGTCGTGATGATTGAGGACTACGAAATTGAAGAGTATGAT GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGGEST: gi|58672846|gb|CK061532.1|CK061532
genomic: CAAAACCTACTGTCGTGATGATTGAGGACTACGAAATTGAAGAGTATGATgtaagtttgc ... acatatgcagGAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG
EST: CAAAACCTACTGTCGTGATGATTGAGGACTACGAAATTGAAGAGTATGAT GAACCCCCTGTGTTTG
genomic: CAAAACCTACTGTCGTGATGATTGAGGACTACGAAATTGAAGAGTATGATgtaagtttgc ... acatatgcagGAACCCCCTGTGTTTG
tcaggagaggccttggaatgattgaatttaatctaactatattatacatatgcagGAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG
atctaac putative branch site (score: 2)
aatgattgaatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgctggccatttcattattcacgtttgtgggaaacatgaaattctgacttcttttttctcagccctcaggagaggccttggaatgattgaatttaatctaactatattatacatatgcagGAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA