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gtactaattctatcagaatggtccctgattctccgaataatagttttgttgacaatgaaaagtattaaagaaggcttacactatgatcaatgttgtgctcttacagGTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAGTAAGAATCAGATACTACAGAAACTACATCACTGAGCTCAAGAAGGCGAT
species | Oryza sativa |
transcript | LOC_Os07g46280.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTATGTAAAGGAAACATATGGAAACCCTACAATGATCCTTTCTGAAAATG GTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAGEST: gi|86482902|gb|CI125535.1|CI125535
genomic: CTATGTAAAGGAAACATATGGAAACCCTACAATGATCCTTTCTGAAAATGgtactaattc ... gctcttacagGTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAG
EST: TGATCCTTTCTGAAAATG GTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAGEST: gi|29627014|gb|CB632025.1|CB632025
genomic: TGATCCTTTCTGAAAATGgtactaattc ... gctcttacagGTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAG
EST: CTATGTAAAGGAAACATATGGAAACCCTACAATGATCCTTTCTGAAAATG GTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAGEST: gi|88959253|gb|CI092962.1|CI092962
genomic: CTATGTAAAGGAAACATATGGAAACCCTACAATGATCCTTTCTGAAAATGgtactaattc ... gctcttacagGTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAG
EST: CTATGTAAAGGAAACATATGGAAACCCTACAATGATCCTTTCTGAAAATG GTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAG
genomic: CTATGTAAAGGAAACATATGGAAACCCTACAATGATCCTTTCTGAAAATGgtactaattc ... gctcttacagGTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAG
acaatgaaaagtattaaagaaggcttacactatgatcaatgttgtgctcttacagGTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAGTAAGAATCAGATACTACAGAAACTACATCACTGAGCTCAAGAAGGCGAT
ggcttac putative branch site (score: 3)
tgctctt putative PPT
aaaagtattaaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaattctatcagaatggtccctgattctccgaataatagttttgttgacaatgaaaagtattaaagaaggcttacactatgatcaatgttgtgctcttacagGTATGGACCAACCTGGCAACGTCAGTATCACTCAGGGTGTGCATGATACAGTAAGAATCAGATACTACAGAAACTACATCACTGAGCTCAAGAAGGCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG