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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcaaactctgcggtgatgccatgaaaaacattctcgcttcgaaagatttcctgactgtctgaactctgagctcctacatgtaaaaccagtagtctcatcagacccatcccatgtactttttttcttggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAGTACACAGACTGTGCATACCCTTGTGATGGTACCTGCCATCATCTTACAT

Basic information

species Oryza sativa
transcript LOC_Os07g44070.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g44070.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G160569_T03 (Zea mays), 3'ss of exon 7
gtacgcaaactctgcggtgatgccatgaaaaacattctcgcttcgaaagatttcctgactgtctgaactctgagc-tcctacatgtaaaaccagtagtctcatcagacccatcccatgtacttt--ttttcttggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAGTACACAGACTGTGCATACCCTTGTGATGGTACCTGCCATCATCTTACAT
                ||       | | |||||  | |        | || ||| | ||   | | | |  ||| |  |    |  ||   ||| |     ||    |   |     | |||     |  |  | | | |||| ||| ||||| || || || |||||||| ||||| ||||   |||| ||||||||||||||  |||||||||| ||||| || |||||||| |||   |
----------------gtacgcgtgttagaaacaaacgcaaacaacgaaatatccggcctcggtta-cacgaagcattttgttggcgaagttagtcgatctgtc---tctgacgagcattcttcgacatcttacggtttacagAAAATCGCTGACGCTGTTGGGGACTGGTTCTTCGAGAGGGGGAACGCCAAGTACACAGACTGCCCATACCCTTGCGATGGCACTTGCCATCACCTTGTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88224344|gb|CI224193.1|CI224193
EST:     AGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: AGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
EST: gi|88847013|gb|CI001285.1|CI001285
EST:     AGAGACAGGACACACGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
EST: gi|88246350|gb|CI246199.1|CI246199
EST:     AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
EST: gi|86498098|gb|CI140731.1|CI140731
EST:     AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
EST: gi|88837502|gb|CI078862.1|CI078862
EST:     GGGATTCTCCTCGTCTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: GGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
EST: gi|88849021|gb|CI087543.1|CI087543
EST:     AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
EST: gi|88226291|gb|CI226207.1|CI226207
EST:     AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
EST: gi|86500530|gb|CI143163.1|CI143163
EST:     AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
EST: gi|86436207|gb|CI117929.1|CI117929
EST:     CTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: CTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
EST: gi|29685047|gb|CB681322.1|CB681322
EST:     AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
EST: gi|88834050|gb|CI077531.1|CI077531
EST:     AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAG                         AGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG
genomic: AGAGACAGGACACATGGTACGCAGGGGATTCTCCTCGTCTCGGTAACAAGgtacgcaaac ... ggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaccagtagtctcatcagacccatcccatgtactttttttcttggatatgcagAGAATTGCTGAAGCAGTAGGCGACTGGTTTTTCGATAGGGCAGACGCGAAGTACACAGACTGTGCATACCCTTGTGATGGTACCTGCCATCATCTTACAT
                                tactttttttcttg  CT-rich tract
                                tacttttttt  TA-rich tract