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...agcatgcttaagcttatttgcattcgtgacttgctttactgtgttcttggtatagaagattaaacacatatcttctatattgacgtcctataattttcagGAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG
species | Oryza sativa |
transcript | LOC_Os07g37610.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAG GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATEST: gi|29615465|gb|CB620477.1|CB620477
genomic: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAGgtatgctgtg ... taattttcagGAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAAT
EST: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAG GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGGEST: gi|29661017|gb|CB657292.1|CB657292
genomic: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAGgtatgctgtg ... taattttcagGAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG
EST: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAG GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGGEST: gi|218487780|gb|FG970670.1|FG970670
genomic: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAGgtatgctgtg ... taattttcagGAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG
EST: AGGCCCCTTCAATTGTAGTTGTTGATGGCCATGAGTTTGAGGAATATGAG GAGCCACCAATACTTGGGAGGAGGACATATATTGTGACAGACCAATCAGGEST: gi|88347742|gb|CI655095.1|CI655095
genomic: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAGgtatgctgtg ... taattttcagGAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG
EST: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAG GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGGEST: gi|88570252|gb|CI661427.1|CI661427
genomic: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAGgtatgctgtg ... taattttcagGAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG
EST: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAG GAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG
genomic: AGGCCCCTTCAATTGTTGTTGTTGATGGCCATGAGTTTGAGGAATATGAGgtatgctgtg ... taattttcagGAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG
cttggtatagaagattaaacacatatcttctatattgacgtcctataattttcagGAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG
tattgac putative branch site (score: 18)
ttttc putative PPT
tatagaagattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcatgcttaagcttatttgcattcgtgacttgctttactgtgttcttggtatagaagattaaacacatatcttctatattgacgtcctataattttcagGAGCCACCAATACTTGGGAGGAGGACATATTTTGTGACAGACCAATCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
agcatgc
- - - - - - - - - tgcattc
- - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - tttactg
- - - - - - - - - - - - - - - - - - - - - gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - -atagaaga