1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttaacatgagtaactgacattaccaagcaattataccatattttacatgtcatgtgcattgaaccttcttgttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG
species | Oryza sativa |
transcript | LOC_Os07g32460.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAG GCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTEST: gi|86477363|gb|CI119996.1|CI119996
genomic: CTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAGgttaacatga ... gttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTT
EST: CCATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAG GCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTEST: gi|89167661|gb|CI109062.1|CI109062
genomic: CTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAGgttaacatga ... gttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTT
EST: CTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAG GCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTEST: gi|112785734|gb|EE591305.1|EE591305
genomic: CTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAGgttaacatga ... gttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTT
EST: CTATTCATTCCCATA-GCGTGCTGAAAAAGCC-AGTACTTC-TTGCTGAG GCGGGTGCATAACTTCA-TGGTAC-ACAGAAA-G-AGT-GAGTT-A-TTGTEST: gi|86827427|gb|CI272824.1|CI272824
genomic: CTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAGgttaacatga ... gttgctgcagGCGG-TGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGT
EST: CTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAG GCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTEST: gi|86433112|gb|CI093455.1|CI093455
genomic: CTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAGgttaacatga ... gttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTT
EST: TATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAG GCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTEST: gi|86431539|gb|CI085150.1|CI085150
genomic: TATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAGgttaacatga ... gttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTT
EST: TATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAG GCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTEST: gi|3763693|gb|AU030445.1|AU030445
genomic: TATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAGgttaacatga ... gttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTT
EST: CCCAGTACTTCCTTGCTGAG GCGNTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTT
genomic: CCCAGTACTTCCTTGCTGAGgttaacatga ... gttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTT
agcaattataccatattttacatgtcatgtgcattgaaccttcttgttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG
ccttcttgtt CT-rich tract
ttataccatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaacatgagtaactgacattaccaagcaattataccatattttacatgtcatgtgcattgaaccttcttgttgctgcagGCGGTGCATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG