1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...cacaaacagttccatttggaagaagaacgagtgcactaaagtttattctagcattgtcaatatactgtaactttgcttacctgagtaatttaatttatagATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTATGGGAG
species | Oryza sativa |
transcript | LOC_Os07g31460.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTG ATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTATEST: gi|29678551|gb|CB674826.1|CB674826
genomic: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttcca ... taatttatagATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTAT
EST: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTG ATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTATEST: gi|29621976|gb|CB626987.1|CB626987
genomic: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttcca ... taatttatagATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTAT
EST: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTG ATTCTGGATTTCACTGAEST: gi|58696150|gb|CK084837.1|CK084837
genomic: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttcca ... taatttatagATTCTGGATTTCACTGA
EST: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTG ATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTAT
genomic: CCAATTGCTTTACATTCTACTGTCGAAGTTTTGGATATGAAGCTCGTCTGgttagttcca ... taatttatagATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTAT
ttctagcattgtcaatatactgtaactttgcttacctgagtaatttaatttatagATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTATGGGAG
tgagtaatttaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacaaacagttccatttggaagaagaacgagtgcactaaagtttattctagcattgtcaatatactgtaactttgcttacctgagtaatttaatttatagATTCTGGATTTCACTGATCATGTGTGGACAGAGTGTTTTTCAAACTTGTATGGGAG
-acaaaca
- - - - - -ccatttg
- - - - - - - - - -aagaagaa
- - - - - - - - - - - - - - - -tgcacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac