1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tacggatgtatctttaccttgtggtgtatacaatgcttttcattgtataaaattgctctattaccacagctacgaataattttttaaaatctgattgcagGAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCACTTGTGGAAGTGCTGACGCCCTACCTTGAGACATTTTGGCACCAGAGCT
species | Oryza sativa |
transcript | LOC_Os07g30840.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATGGATTTTGAAGAGGACCGCATCCGACCATAAAG GAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCAEST: gi|88219553|gb|CI219113.1|CI219113
genomic: AATGGATTTTGAAGAGGACCGCATCCGACCAAAAAGgtaatatatt ... ctgattgcagGAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCA
EST: GAACCTGGAGGAATAATGGATTTTGAAGAGGACCGCATCCGACCAAAAAG GAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCA
genomic: GAACCTGGAGGAATAATGGATTTTGAAGAGGACCGCATCCGACCAAAAAGgtaatatatt ... ctgattgcagGAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCA
tataaaattgctctattaccacagctacgaataattttttaaaatctgattgcagGAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCACTTGTGGAAGTGCTGACGCCCTACCTTGAGACATTTTGGCACCAGAGCT
atctgat putative branch site (score: 4)
aataattttttaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacggatgtatctttaccttgtggtgtatacaatgcttttcattgtataaaattgctctattaccacagctacgaataattttttaaaatctgattgcagGAGGCGACAACCAATGGCATAGTTTCAATGGCATACTTACCTGCCTCCCCACTTGTGGAAGTGCTGACGCCCTACCTTGAGACATTTTGGCACCAGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - -aatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagctac