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...tttttgtttatttgttctgaaaagtatctttataatgaattgcatcccattggcatgtaatttcaaaaattttatttgtcctgctctacttcatctgcagTGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGCAACTTCATTGAAGAATAAGGAGTTGATTGGTAAATCAGATCCATATGTG
species | Oryza sativa |
transcript | LOC_Os07g22640.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAG TGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGCEST: gi|29665127|gb|CB661402.1|CB661402
genomic: AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAGgtgacttctc ... tcatctgcagTGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGC
EST: AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAG TGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGCEST: gi|29658142|gb|CB654417.1|CB654417
genomic: AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAGgtgacttctc ... tcatctgcagTGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGC
EST: AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAG TGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGCEST: gi|29689584|gb|CB685859.1|CB685859
genomic: AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAGgtgacttctc ... tcatctgcagTGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGC
EST: AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAG TGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGC
genomic: AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAGgtgacttctc ... tcatctgcagTGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGC
cccattggcatgtaatttcaaaaattttatttgtcctgctctacttcatctgcagTGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGCAACTTCATTGAAGAATAAGGAGTTGATTGGTAAATCAGATCCATATGTG
tcctgctctacttc CT-rich tract
atgtaatttcaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgtttatttgttctgaaaagtatctttataatgaattgcatcccattggcatgtaatttcaaaaattttatttgtcctgctctacttcatctgcagTGAGCTGGAGCTTAAACCTCAGGGAAGACTTACTGTTACTGTAGTAAAAGCAACTTCATTGAAGAATAAGGAGTTGATTGGTAAATCAGATCCATATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - tgcatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaat