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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaaaataattcatgttttgtttgatcttgtcatgctttacaattgggttggttgcaagttctaattcttgtttctattgtacacacacatacatccgtatgcaaagattataaccaagtattctgaacgggacacatacaaatttccttgtttgtgtagATGGTTGATGCTTTCATGGCAATAAGGCCTCTTCCCAACATGTTTGGCTGA

Basic information

species Oryza sativa
transcript LOC_Os07g17770.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g17770.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G002687_T01 (Zea mays), 3'ss of exon 10
gtaatgaaaataattcatgttttgtttgatcttgtcatgctttacaattgggttggttgcaagttctaattcttgtttctattgtacacacacatacatccgtatgcaaagattataaccaagtattctgaacgggacacatacaaatttccttgtttgtgtagATGGTTGATGCTTTCATGGCAATAAGGCCTCTTCCCAACATGTTTGGCTGA-------------------------------------------------
                                                        ||| |  |   | |||        | || |   | |        | | ||   || || ||    | | | |||  |    |    || |   | ||  |||||| ||||||| ||||| ||||||||| | |||||||||||||| ||||||||||||                                                 
------------------------------------------------------ttttgtagttgtcacttcccagactgaatgaaactataatcggcctcatgtg---agtttgta--tgaatttcctg--caatgctttgacga---ttctgttttgtgcagATGGTCGATGCATTCATGGCAGTGAGGCCTCTTCCCAATATGTTTGGCTGAGCATCACGGCGACAACTTGAACAAACATTTTTGTTATCAGGGAGAATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattataaccaagtattctgaacgggacacatacaaatttccttgtttgtgtagATGGTTGATGCTTTCATGGCAATAAGGCCTCTTCCCAACATGTTTGGCTGA
   ttataac  putative branch site (score: 2)
                                      tttccttgttt  putative PPT
                               atacaaattt  TA-rich tract