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gttagcaccattatctatgaagtgtggttatcctttgcatgactgtacagctagattatggttgataataatgtgcattgctgtaggcttagcttaacccttttcttgatactttaattgacacttttgccatgcctggacatttttagGCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAG
species | Oryza sativa |
transcript | LOC_Os07g10490.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATAAGTCACCTGATGGGGAAACCTATGTTAAAGGCCTTCTCCTATCCAAG GCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAGEST: gi|300215694|gb|HO088320.1|HO088320
genomic: ATAAGTCACCTGATGGGGAAACCTATGTTAAAGGCCTTCTCCTATCCAAGgttagcacca ... acatttttagGCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAG
EST: ATAAGTCACCTGATGGGGAAACCTATGTTAAAGGCCTTCTCCTATCCAAG GCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAGEST: gi|29629811|gb|CB634820.1|CB634820
genomic: ATAAGTCACCTGATGGGGAAACCTATGTTAAAGGCCTTCTCCTATCCAAGgttagcacca ... acatttttagGCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAG
EST: ATAAGTCACCTGATGGGGAAACCTATGTTAAAGGCCTTCTCCTATCCAAG GCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAGEST: gi|8956710|gb|BE230513.1|BE230513
genomic: ATAAGTCACCTGATGGGGAAACCTATGTTAAAGGCCTTCTCCTATCCAAGgttagcacca ... acatttttagGCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAG
EST: ATAAGTCACCTGATGGGGAAACCTATGTTAAAGGCCTTCTCCTATCCAAG GCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAGEST: gi|29679863|gb|CB676138.1|CB676138
genomic: ATAAGTCACCTGATGGGGAAACCTATGTTAAAGGCCTTCTCCTATCCAAGgttagcacca ... acatttttagGCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAG
EST: ATAAGTCACCTGATGGGGAAACCTATGTTAAAGGCCTTCTCCTATCCAAG GCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAG
genomic: ATAAGTCACCTGATGGGGAAACCTATGTTAAAGGCCTTCTCCTATCCAAGgttagcacca ... acatttttagGCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAG
taacccttttcttgatactttaattgacacttttgccatgcctggacatttttagGCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAG
aattgac putative branch site (score: 62)
cattttt putative PPT
ttgatactttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcaccattatctatgaagtgtggttatcctttgcatgactgtacagctagattatggttgataataatgtgcattgctgtaggcttagcttaacccttttcttgatactttaattgacacttttgccatgcctggacatttttagGCTACAAGTAGAGAGATAATCAAAGCAGATGCATATGTCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG