1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgcaagaaatgtttctcttaaaactaaatgacctgtccttctccaatttccggagcatctctttgtttatgttataacatgatgcctgctgataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAATGTCCCTGCTGACTGGAAAG
species | Oryza sativa |
transcript | LOC_Os07g09000.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|58603054|gb|CK013582.1|CK013582
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|117233168|gb|CT848021.1|CT848021
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|58682996|gb|CK071683.1|CK071683
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|58687497|gb|CK076184.1|CK076184
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|33796051|gb|CF323893.1|CF323893
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|29640029|gb|CB645038.1|CB645038
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|87036703|gb|CI191325.1|CI191325
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|38480849|gb|CF964938.1|CF964938
genomic: GTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|27410230|gb|CA923300.1|CA923300
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|29674146|gb|CB670421.1|CB670421
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAAEST: gi|87036663|gb|CI191285.1|CI191285
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
EST: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAG GGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
genomic: GTCCATCTTGGTTCTCCGGTTTCCTCAATTGAATTTTGTCCTACTGAAAGgtactggaac ... gataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAA
atttccggagcatctctttgtttatgttataacatgatgcctgctgataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAATGTCCCTGCTGACTGGAAAG
tttgtttatgttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaagaaatgtttctcttaaaactaaatgacctgtccttctccaatttccggagcatctctttgtttatgttataacatgatgcctgctgataccgcagGGCCGTAATCTCCACATCGCATCAATGGGGAGCAGAGCTGACAAAGCTGAATGTCCCTGCTGACTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- caagaaa
- - - - -tgtttct
- - - - - - - - - - aaactaa
- - - - - - - - - - - - - - tgacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctgc