1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgttttcatctcgaaggtcactctgatatagagtaccttatgttatcaacaagtgccccaatgttttgagttacctctgaattgattatcctcttggcagCTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAGGTGAAGAAGCAGAAAATTGTGGAAAGGAAAAGGAAAACGATCTACAAAAGGCAAATGCACA
species | Oryza sativa |
transcript | LOC_Os07g07974.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGCAACTGCAGATGTGAGGGTTGCAAAAACACATTTGGCAAAAGAGATG CTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAAGTGAAGAAGCAGEST: gi|58664074|gb|CK052760.1|CK052760
genomic: CAGCAACTGCAGATGTGAGGGTTGCAAAAACACATTTGGCAAAAGAGATGgtgagtatat ... ctcttggcagCTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAGGTGAAGAAGCAG
EST: CAGCAACTGCAGATGTGAGGGTTGCAAAAACACATTTGGCAAAAGAGATG CTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAGGTGAAGAAGCAGEST: gi|42592246|gb|CK738732.1|CK738732
genomic: CAGCAACTGCAGATGTGAGGGTTGCAAAAACACATTTGGCAAAAGAGATGgtgagtatat ... ctcttggcagCTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAGGTGAAGAAGCAG
EST: CAGCAACTGCAGATGTGAGGGTTGCAAAAACACATTTGGCAAAAGAGATG CTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAGGTGAAGAAGCAGEST: gi|11544373|gb|BF475191.1|BF475191
genomic: CAGCAACTGCAGATGTGAGGGTTGCAAAAACACATTTGGCAAAAGAGATGgtgagtatat ... ctcttggcagCTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAGGTGAAGAAGCAG
EST: CAGCAACTGCAGATGTGAGGGTTGCAAAAACACATTTGGCAAAAGAGATG CTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAGGTGAAGAAGCAG
genomic: CAGCAACTGCAGATGTGAGGGTTGCAAAAACACATTTGGCAAAAGAGATGgtgagtatat ... ctcttggcagCTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAGGTGAAGAAGCAG
tcaacaagtgccccaatgttttgagttacctctgaattgattatcctcttggcagCTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAGGTGAAGAAGCAGAAAATTGTGGAAAGGAAAAGGAAAACGATCTACAAAAGGCAAATGCACA
aattgat putative branch site (score: 22)
ttatcctctt CT-rich tract
aattgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttcatctcgaaggtcactctgatatagagtaccttatgttatcaacaagtgccccaatgttttgagttacctctgaattgattatcctcttggcagCTGCTGTATCAACTGAGGCTGAAGAAATGAAGCAAGGAGGTGAAGAAGCAGAAAATTGTGGAAAGGAAAAGGAAAACGATCTACAAAAGGCAAATGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - -caagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg