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gtactgtgcatatcatcttatatttgcaattctcgacctcttttttgcacagtacacctagacacctgagagttattattttgatatactttgcatgttgatactgactgtgtctaccggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGTCTTCACAATAATGCAGCAGTGGCTGCATTAGCTGCACAAAGAGCTGGTG
species | Oryza sativa |
transcript | LOC_Os07g06980.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATG GTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGTEST: gi|218482428|gb|FG960539.1|FG960539
genomic: ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgca ... cggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
EST: ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATG GTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTCTGGTEST: gi|12405058|gb|AU166659.1|AU166659
genomic: ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgca ... cggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
EST: ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATG GTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGTEST: gi|58665950|gb|CK054636.1|CK054636
genomic: ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgca ... cggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
EST: TAGTATCTGGGCGTGTTCGCAATGGATTTGCAATG GTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
genomic: TAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgca ... cggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
ttattattttgatatactttgcatgttgatactgactgtgtctaccggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGTCTTCACAATAATGCAGCAGTGGCTGCATTAGCTGCACAAAGAGCTGGTG
tactgac putative branch site (score: 1)
attttgatatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtgcatatcatcttatatttgcaattctcgacctcttttttgcacagtacacctagacacctgagagttattattttgatatactttgcatgttgatactgactgtgtctaccggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGTCTTCACAATAATGCAGCAGTGGCTGCATTAGCTGCACAAAGAGCTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT