Skip to another splice site:
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 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
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 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttccagtgccccttcttcagaggttatcacaaatgtacctactgtcattaaagtattaatggttttcaacatgatttcttttctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG

Basic information

species Oryza sativa
transcript LOC_Os07g02350.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g02350.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM5G845755_T01 (Zea mays), 3'ss of exon 7
gtattt-ccagtgccccttcttcagaggttatcacaaatgtaccta-ctgtcattaaagtattaatggttttcaacatgatttcttt-tctatgt---tagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG
|| ||| | |||||| || |          ||   ||||  ||||| ||  || |   ||| |  |    |  |||| |||| |||| | ||| |   |||||||| |||||||| ||||||||| | || |||||||| ||||| || |||||||||||||||||||||
gtgtttgctagtgccactgc----------attttaaatagacctaactaccaattg-gtagtgcttaactctaacaggattcctttgtatatatctgtagGCCATAGATTTCCTCGACAAGCTTTTGCGTTATGATCATCAGGACAGGCTTACTGCACGTGAAGCTATG

upper sequence: LOC_Os07g02350.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G143602_T03 (Zea mays), 3'ss of exon 8
gtattt-ccagtgccccttcttcagaggttatcacaaatgtacctactgtc--attaaagtattaatggttttcaacatgatttcttt-tctatgt---tagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG-------------------------------
|| | | | | || | ||  |   |   ||   | |   ||| |||   |   ||| | |   |   |  |    ||| |||  |||| | ||| |   |||||||| |||||||||||||||||| | || |||||||| ||||| || |||||||||| ||||||||||                               
gtgtgtgctaatgtctctctt---gtattttaaataggcgtaactagcatttgattgatg-gctctcgactcctgacaggatccctttgtttatctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTACTGCACTTGAAGCTATGGTGAATTTCCCAGTGCTAGTTTTAATTGTTT

upper sequence: LOC_Os07g02350.1 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G143602_T01 (Zea mays), 3'ss of exon 8
gtattt-ccagtgccccttcttcagaggttatcacaaatgtacctactgtc--attaaagtattaatggttttcaacatgatttcttt-tctatgt---tagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG
|| | | | | || | ||  |   |   ||   | |   ||| |||   |   ||| | |   |   |  |    ||| |||  |||| | ||| |   |||||||| |||||||||||||||||| | || |||||||| ||||| || |||||||||| ||||||||||
gtgtgtgctaatgtctctctt---gtattttaaataggcgtaactagcatttgattgatg-gctctcgactcctgacaggatccctttgtttatctctgtagGCCATAGATTTCCTTGACAAGCTTTTGCGTTATGATCATCAGGAGAGGCTTACTGCACTTGAAGCTATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2317547|gb|C22601.1|C22601
EST:     GTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: GTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|58686212|gb|CK074899.1|CK074899
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|89194544|gb|CI116981.1|CI116981
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|29616864|gb|CB621876.1|CB621876
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|89194075|gb|CI116512.1|CI116512
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|94362908|gb|CI053069.1|CI053069
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|89174479|gb|CI110677.1|CI110677
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|88957426|gb|CI095367.1|CI095367
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|89182018|gb|CI113524.1|CI113524
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|86488366|gb|CI130999.1|CI130999
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|2317324|gb|C22378.1|C22378
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|58679114|gb|CK067801.1|CK067801
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCGACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|89182336|gb|CI113705.1|CI113705
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|86491402|gb|CI134035.1|CI134035
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|58598121|gb|CK008649.1|CK008649
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|29657466|gb|CB653741.1|CB653741
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|2796293|gb|AA749587.1|AA749587
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|88993477|gb|CI110298.1|CI110298
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|86419015|gb|CI053816.1|CI053816
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|89181558|gb|CI113064.1|CI113064
EST:     GCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: GCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|29662231|gb|CB658506.1|CB658506
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|89194752|gb|CI117189.1|CI117189
EST:     CAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|66916011|gb|CX102859.1|CX102859
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|27577759|gb|CB000454.1|CB000454
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|86418789|gb|CI053590.1|CI053590
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|88313574|gb|CI671699.1|CI671699
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|89180390|gb|CI044669.1|CI044669
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|86259780|gb|CI065653.1|CI065653
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|86425532|gb|CI070629.1|CI070629
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|89169654|gb|CI110013.1|CI110013
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         CCCATCGATTTCCTTGACGAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|29663347|gb|CB659622.1|CB659622
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|86864819|gb|CI344303.1|CI344303
EST:     TGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: TGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|29661178|gb|CB657453.1|CB657453
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|29619982|gb|CB624994.1|CB624994
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|86490821|gb|CI133454.1|CI133454
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|86835422|gb|CI347879.1|CI347879
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
EST: gi|86524746|gb|CI164952.1|CI164952
EST:     CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAG                         GCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT
genomic: CTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 75 (downstream exon)
Score: 53

GCACAGCAGGAAACCTTGGTCAAAGTTTATTAATGCTGACAACCAACATCTAGTATCCCCAGAGgtatttccag ... tctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctactgtcattaaagtattaatggttttcaacatgatttcttttctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG
                 tattaat  putative branch site (score: 53)
                                      tttcttttctatgtt  putative PPT
        tcattaaagtattaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttccagtgccccttcttcagaggttatcacaaatgtacctactgtcattaaagtattaatggttttcaacatgatttcttttctatgttagGCCATCGATTTCCTTGACAAGCTTCTTCGCTATGATCACCAGGATAGACTTACTGCACGTGAAGCTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC