1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cttttggtgcattctggcaggagattggattcgacgtgacaattaataagactttagtactggttatgcccaataatttattcaatttcatttttggcagGACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTCGTTTTGAGGATGAACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAG
species | Oryza sativa |
transcript | LOC_Os07g01880.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCAAAGAAGGCAGCTTTCTCCTGGATTTTTGGAAGATGCATTAGATGAG GACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTEST: gi|86597143|gb|CI272738.1|CI272738
genomic: GGCAAAGAAGGCAGCTTTCTCCTGGATTTTTGGAAGATGCATTAGATGAGgtgggtttct ... tttttggcagGACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGT
EST: GGCAAAGAAGGCAGCTTTCTCCTGGATTTTTGGAAGATGCATTAGATGAG GACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTEST: gi|29639167|gb|CB644176.1|CB644176
genomic: GGCAAAGAAGGCAGCTTTCTCCTGGATTTTTGGAAGATGCATTAGATGAGgtgggtttct ... tttttggcagGACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGT
EST: GGCAAAGAAGGCAGCTTTCTCCTGGATTTTTGGAAGATGCATTAGATGAG GACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTEST: gi|86482587|gb|CI125220.1|CI125220
genomic: GGCAAAGAAGGCAGCTTTCTCCTGGATTTTTGGAAGATGCATTAGATGAGgtgggtttct ... tttttggcagGACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGT
EST: GGCAAAGAAGGCAGCTTTCTCCTGGATTTTTGGAAGATGCATTAGATGAG GACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTEST: gi|58674618|gb|CK063305.1|CK063305
genomic: GGCAAAGAAGGCAGCTTTCTCCTGGATTTTTGGAAGATGCATTAGATGAGgtgggtttct ... tttttggcagGACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGT
EST: GGCAAAGAAGGCAGCTTTCTCCTGGATTTTTGGAAGATGCATTAGATGAG GACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGT
genomic: GGCAAAGAAGGCAGCTTTCTCCTGGATTTTTGGAAGATGCATTAGATGAGgtgggtttct ... tttttggcagGACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGT
ataagactttagtactggttatgcccaataatttattcaatttcatttttggcagGACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTCGTTTTGAGGATGAACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAG
aattaat putative branch site (score: 9)
tttcattttt putative PPT
aataatttattcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttggtgcattctggcaggagattggattcgacgtgacaattaataagactttagtactggttatgcccaataatttattcaatttcatttttggcagGACGAGGAACCTGACCATCAATATGGTTCTCGCCGAATGCCAGCACGTAGTCGTTTTGAGGATGAACTGGAGGCTGAAGCCCTAGCTGAGAGGCGCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - -tgcattc
- - - - - - - - gcaggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgccc