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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattctaagcactcagctaagaatatctgcaaacttgttctagtttccgtggctataatgtgtgaatgattttgttccccttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAGAGGTGTCGTCTACAGGGGAGTCAATTTGCTCGCTACGGTTCGCAGCAC

Basic information

species Oryza sativa
transcript LOC_Os07g01490.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g01490.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G436981_T02 (Zea mays), 3'ss of exon 15
gtaaattctaagcactcagctaagaatatctgcaaacttgttctagtttccgtggctataatgtgtgaatgattttgttccccttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAGAGGTGTCGTCTACAGGGGAGTCAATTTGCTCGCTACGGTTCGCAGCAC
|||   |     |||      |    | || || ||   |||  |  ||   |||    ||    | | ||||  | ||  |     |||||||| || || ||||| |||||||||||||| |||||||||||||||||||| || | ||| || |||||||||||  |||||||  | ||||| || ||| 
gtattgttccgacac------attggtttcggctaaaa-gtttaatcttaaatggtatcaagtactaactgatgcttttggc----aacacagCCGTGTCTCGGAGGGGACTCGAAGACACTGATGTTTGTGAATCTGTCTCCTGAAGCGTCCTCGACAGGGGAGTCTCTTTGCTCATTGCGGTTTGCTGCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88286255|gb|CI522555.1|CI522555
EST:     TACTTGCTACAN                         CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
genomic: TACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: gi|86482699|gb|CI125332.1|CI125332
EST:     AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAG                         CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
genomic: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: gi|58686047|gb|CK074734.1|CK074734
EST:     AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAG                         CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
genomic: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: gi|88989368|gb|CI043867.1|CI043867
EST:     AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAG                         CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
genomic: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: gi|58681647|gb|CK070334.1|CK070334
EST:     AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAG                         CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
genomic: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: gi|88273313|gb|CI388769.1|CI388769
EST:     AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAG                         CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
genomic: AAGAGGAGCACGTTCCGTTCAGGAACTCAAAATTAACGTACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
EST: gi|58684836|gb|CK073523.1|CK073523
EST:     TACTTGCTACAG                         CCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA
genomic: TACTTGCTACAGgtaaattcta ... ttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctagtttccgtggctataatgtgtgaatgattttgttccccttggacacagCCATGCCTTGGAGGAGACTCGAAGACACTTATGTTTGTGAATCTGTCTCCAGAGGTGTCGTCTACAGGGGAGTCAATTTGCTCGCTACGGTTCGCAGCAC
                                  ttttgttcccctt  CT-rich tract
                             aatgatttt  TA-rich tract