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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactatttttgtagtagtagtatatttcaatagatcctgtgatggattcactagtggctagggaacttggactgatgaatatattttatcttgcacagGCTTTCTGCTGACATGTCAAAAGCTGACAAGGTTCTTGTTGTGGAAAGAGTTATCGAGGCTTTGGGACTGCAAGCAGTTCGTGATTCTTTGGTTGGAACT

Basic information

species Oryza sativa
transcript LOC_Os06g51460.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g51460.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G166889_T01 (Zea mays), 3'ss of exon 8
---------gtactatttttg--tag-tagtagtatatttcaataga----tcctgtgatggattcactag-tggctagggaacttggactgatgaatatattttatcttgcaca-------gGCTTTCTGCTGACATGTCAAAAGCTGACAAGGTTCTTGTTGTGGAAAGAGTTATCGAGGCTTTGGGACTGCAAGCAGTTCGTGATTCTTTGGTTGGAACT
         | |||  |   |  ||| | |  |  |   |   |||     || | | ||    |  |||| | |||||  || ||  ||   ||||| | | ||   |||||||       |||| || |||||||||| ||| || || ||||||||||| ||||| ||||| |||||| | ||||| ||||||||||| |||||||| ||||| ||||||
gtatgtcgtgaactgctgcagcctagcttgctgcttgcattggtagtactctcttctcatcagctagctagctagctagaaaaatttaac-actgaatgtttcttgcattgcacatgaaccagGCTCTCCGCTGACATGTTAAAGGCCGATAAGGTTCTTGTCGTGGAGAGAGTGATCGAGTCCTTGGGGCTGCAAGCAGTCCGTGATTCCTTGGTGGGAACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattcactagtggctagggaacttggactgatgaatatattttatcttgcacagGCTTTCTGCTGACATGTCAAAAGCTGACAAGGTTCTTGTTGTGGAAAGAGTTATCGAGGCTTTGGGACTGCAAGCAGTTCGTGATTCTTTGGTTGGAACT
                          gactgat  putative branch site (score: 3)
                                        ttttatctt  putative PPT
                               atgaatatattttatc  TA-rich tract