1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaggcaggtaagtaccctctcaacgatatctattaaaaaggcaccgataatctgtcaaccccattattgtttattcatactgttcttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG
species | Oryza sativa |
transcript | LOC_Os06g50120.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGEST: gi|55413904|gb|CV726280.1|CV726280
genomic: TTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAA-T--T-----Ggtaggcaggt ... tta
EST: TTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGEST: gi|86251814|gb|CI019006.1|CI019006
genomic: TTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAA-T--T-----Ggtaggcaggt ... tta
EST: TTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGEST: gi|89185473|gb|CI051801.1|CI051801
genomic: TTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAA-T--T-----Ggtaggcaggt ... tta
EST: TCCATTCATTTCTCCATTTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGEST: gi|88964764|gb|CI084762.1|CI084762
genomic: TCCATTCATTTCTCCA-TTAAAAAGGCATCACAAATGGTGAAAGAAA-T--T-----Ggtaggcaggt ... tta
EST: TTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAG
genomic: TTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAA-T--T-----Ggtaggcaggt ... tta
gcaccgataatctgtcaaccccattattgtttattcatactgttcttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG
ctgttctt CT-rich tract
attattgtttattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcaggtaagtaccctctcaacgatatctattaaaaaggcaccgataatctgtcaaccccattattgtttattcatactgttcttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA