1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtttaccatattatttctgactacctcattgagataaaggcacacatgacacttgtcatccaatgtgcattacattacctgtaagtaaatcatagttttaacctcttaattcactatcttattcagGCACTAACGCGATATTTAACTGATGCTATGAAGGAATCGAGGGTTCTTGAATTTTTGCATGCG
species | Oryza sativa |
transcript | LOC_Os06g50030.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTCGGACG GCACTAACGCGATATTTAACTGATGCTATGAAGGAATCGAGGGTTCTTGAAEST: gi|218501862|gb|FG958631.1|FG958631
genomic: AACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTCGGACGgtgagtttac ... tcttattcagGCACTAACGCGATATTTAACTGATGCTATGAAGGAATCGAGGGTTCTTGAA
EST: AACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTCGGACG GCACTAACGCGATATTTAACTGATGCTATGAAGGAATCGAGGGTTCTTGAAEST: gi|25803745|gb|CA759706.1|CA759706
genomic: AACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTCGGACGgtgagtttac ... tcttattcagGCACTAACGCGATATTTAACTGATGCTATGAAGGAATCGAGGGTTCTTGAA
EST: AACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTCGGACG GCACTAACGCGATATTTAACTGATGCTATGAAGGAATCGAGGGTTCTTGAA
genomic: AACTGCTCGAACCTAGAGATGGGTTTGTATCACTTGACAACTTTCGGACGgtgagtttac ... tcttattcagGCACTAACGCGATATTTAACTGATGCTATGAAGGAATCGAGGGTTCTTGAA
acattacctgtaagtaaatcatagttttaacctcttaattcactatcttattcagGCACTAACGCGATATTTAACTGATGCTATGAAGGAATCGAGGGTTCTTGAATTTTTGCATGCG
tcttattc CT-rich tract
taaatcatagttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttaccatattatttctgactacctcattgagataaaggcacacatgacacttgtcatccaatgtgcattacattacctgtaagtaaatcatagttttaacctcttaattcactatcttattcagGCACTAACGCGATATTTAACTGATGCTATGAAGGAATCGAGGGTTCTTGAATTTTTGCATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA