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gtacatacctatgtcactgattccatcatattatttctagtatcccatagcactgaaccttcttgtaagttaaataatgcatatgtcaactatgcttatgcagGTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC
species | Oryza sativa |
transcript | LOC_Os06g49110.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGATGCTGAGGGTTTCCATGATGTCTCCATTATGTCCTATACTGNCAA- GTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATEST: gi|29621569|gb|CB626580.1|CB626580
genomic: TGGATGCTGAGGGTTTCCATGATGTCTCCATTATGTCCTATACTG-CAAAgtacatacct ... gcttatgcagGTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGAT
EST: TTGGATGCTGAGGGTTTCCATGATGTCTCCATTATGTCCTATACTGCAAA GTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCCEST: gi|29624060|gb|CB629071.1|CB629071
genomic: TTGGATGCTGAGGGTTTCCATGATGTCTCCATTATGTCCTATACTGCAAAgtacatacct ... gcttatgcagGTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCC
EST: TTGGATGCTGAGGGTTTCCATGATGTCTCCATTATGTCCTATACTGCAAA GTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCCEST: gi|58586199|gb|CF984507.1|CF984507
genomic: TTGGATGCTGAGGGTTTCCATGATGTCTCCATTATGTCCTATACTGCAAAgtacatacct ... gcttatgcagGTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCC
EST: TTGGATGCTGAGGGTTTCCATGATGTCTCCATTATGTCCTATACTGCAAA GTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCCEST: gi|9788971|gb|BE530981.1|BE530981
genomic: TTGGATGCTGAGGGTTTCCATGATGTCTCCATTATGTCCTATACTGCAAAgtacatacct ... gcttatgcagGTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCC
EST: TTGGATGCTGAGGGTTTCCATGATGTCTCCATTATGTCCTATACTGCAAA GTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCT
genomic: TTGGATGCTGAGGGTTTCCATGATGTCTCCATTATGTCCTATACTGCAAAgtacatacct ... gcttatgcagGTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCC
agcactgaaccttcttgtaagttaaataatgcatatgtcaactatgcttatgcagGTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC
ttgtaagttaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatacctatgtcactgattccatcatattatttctagtatcccatagcactgaaccttcttgtaagttaaataatgcatatgtcaactatgcttatgcagGTACGCCAGTTCGTTTTATGGCCCATTCCGAGAAGCTTTGGATTCAAATCCAAGATTTGGGGACAAGAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG