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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaaaagaagataaaatattctccttgtttcttcatcatgcttttcctggtggttaaggtgcgattaccactgttcagAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGGTGACCAGTATTTCCGGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACT

Basic information

species Oryza sativa
transcript LOC_Os06g46570.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g46570.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G007185_T01 (Zea mays), 3'ss of exon 8
gtaagtaaaaagaagataaaatattc-tccttgtttctt-catcatgcttttcctggtggttaaggtgcgattaccactgttcagAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGG---------TGACCAGTATTTCCGGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACT
|||| ||||||| | | ||| | | ||| || ||||||||| | || |||| || |||| | |||| ||| |||||||||||||||||||| ||||| ||||||||||| | | | ||||| |||||||| || |||||| |||| |||||||||||||||
gtaaagaaaaagagtctcttttgttcattagtatttaggacaacatgcttttgccagttgttacaatgagattgctgctgtccagGGATGTGAGGTACTATGAACCAGAGCACTGGAAATTTGGGGAAGTGGGTAATAAATATTTTCGGCATGCCACCGGTCAACTGTACGCTATTTCAAAAGAT---------

upper sequence: LOC_Os06g46570.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G007185_T01 (Zea mays), 3'ss of exon 8
gtaagtaaaaagaagataaaatattc-tccttgtttctt-catcatgcttttcctggtggttaaggtgcgattaccactgttcagAGATGTGAGGTACTATGAACCTGAGCATTGGAAATTTGG---------TGACCAGTATTTCCGGCATGCAACTGGTCAATTGTATGCTATTTCAAAAGATTTGGCAACT
|||| ||||||| | | ||| | | ||| || ||||||||| | || |||| || |||| | |||| ||| |||||||||||||||||||| ||||| ||||||||||| | | | ||||| |||||||| || |||||| |||| |||||||||||||||
gtaaagaaaaagagtctcttttgttcattagtatttaggacaacatgcttttgccagttgttacaatgagattgctgctgtccagGGATGTGAGGTACTATGAACCAGAGCACTGGAAATTTGGGGAAGTGGGTAATAAATATTTTCGGCATGCCACCGGTCAACTGTACGCTATTTCAAAAGAT---------