Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcaacagttacacattgtgtctttctcgttttcaccttatgacaacatgaagtgcttattatagcaagttttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGGAGGGGTCCCCGTGGTGGACCCCGTGGACGTGGTTACTATGGGAGGGGGT

Basic information

species Oryza sativa
transcript LOC_Os06g30060.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g30060.2 (Oryza sativa), 3'ss of exon 8
lower sequence: GRMZM2G341027_T01 (Zea mays), 3'ss of exon 7
gtaatcaacagttacacattgtgtctttctcgttttcaccttatgacaacatgaagtgcttattatagcaagttttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGGAGGGGTCCCCGTGGTGGACCCCGTGGACGTGGTTACTATGGGA---GGGGGT---
||| ||| ||| ||  |||||  |||||  | ||  ||  | |    | |||  ||||| ||| ||      |||||| ||||||| |||||||| || ||||||||||| || |||||||| ||      ||| ||||| |||||||| ||  | ||||| ||||| || ||||| |   | || |   
gtattca-cagataggcattgaatctttacc-ttcccatatcaccttagcattcagtgcatatcatgatttattttggctgtagACCTTTGGTGACTCAGCAAGGCATCGACCAATGGGCATCCG------AGGTAGGGGCCCCCGTGGCGGCGCTCGTGGTCGTGGCTATTATGGTATTAGAGGATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|568421|gb|D39270.1|D39270
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTNGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86430310|gb|CI082733.1|CI082733
EST:     AGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: AGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86481973|gb|CI124606.1|CI124606
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88256326|gb|CI358714.1|CI358714
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86488111|gb|CI130744.1|CI130744
EST:     ATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: ATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|29662617|gb|CB658892.1|CB658892
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89183658|gb|CI046223.1|CI046223
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88276173|gb|CI396777.1|CI396777
EST:     GGGGGAAT-GAATAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAC                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88955949|gb|CI092237.1|CI092237
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|29623764|gb|CB628775.1|CB628775
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|29645349|gb|CB650356.1|CB650356
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88842378|gb|CI081634.1|CI081634
EST:     ATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: ATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|29618260|gb|CB623272.1|CB623272
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|87016501|gb|CI273711.1|CI273711
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86504148|gb|CI146781.1|CI146781
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89194125|gb|CI116562.1|CI116562
EST:     ATGGAAGAATCAAATTCTCGGAGCAGAGAAAGATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: ATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|87038280|gb|CI192902.1|CI192902
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86478395|gb|CI121028.1|CI121028
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88833552|gb|CI077033.1|CI077033
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|29668809|gb|CB665084.1|CB665084
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86521995|gb|CI162201.1|CI162201
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86869286|gb|CI339010.1|CI339010
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|29662619|gb|CB658894.1|CB658894
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88265797|gb|CI376699.1|CI376699
EST:     GGGGGAATGGAAGAATCAAATTCTCCGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCCTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86597617|gb|CI274608.1|CI274608
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89192610|gb|CI049908.1|CI049908
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86540756|gb|CI180962.1|CI180962
EST:     ATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: ATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88205934|gb|CI205783.1|CI205783
EST:     GAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCGTGCGTGGAGGAGGG
genomic: GAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86431126|gb|CI083549.1|CI083549
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGACTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89184061|gb|CI046626.1|CI046626
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86479330|gb|CI121963.1|CI121963
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86489904|gb|CI132537.1|CI132537
EST:     AAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: AAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|29657197|gb|CB653472.1|CB653472
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86480331|gb|CI122964.1|CI122964
EST:     GGGGGAATGGAAGAGTCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86480549|gb|CI123182.1|CI123182
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89174334|gb|CI110532.1|CI110532
EST:     AAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCTCATGGGCATGCGTGGAGGAGGG
genomic: AAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86430267|gb|CI082690.1|CI082690
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86478440|gb|CI121073.1|CI121073
EST:     GGGGAATGGAAGAATCAAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGAATGGAAGAATC-AAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86430858|gb|CI083281.1|CI083281
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86493522|gb|CI136155.1|CI136155
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88243053|gb|CI244175.1|CI244175
EST:     GGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89176212|gb|CI043233.1|CI043233
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|29656692|gb|CB652967.1|CB652967
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTCGGTGATTTTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|87031161|gb|CI259741.1|CI259741
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86902082|gb|CI300321.1|CI300321
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86478057|gb|CI120690.1|CI120690
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|5003280|gb|AU068429.1|AU068429
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88989520|gb|CI043935.1|CI043935
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|87017800|gb|CI273822.1|CI273822
EST:     GGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|8860143|gb|AU097461.1|AU097461
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86425185|gb|CI070282.1|CI070282
EST:     CTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: CTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86479435|gb|CI122068.1|CI122068
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCATGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89188606|gb|CI115855.1|CI115855
EST:     AATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: AATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88246346|gb|CI246195.1|CI246195
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86868194|gb|CI331910.1|CI331910
EST:     TAGACACAGAC                         ACTTTTGGTGATTCTGCAAGGCATCGGGCCCATGGGCATGCGTGGAGGAGG
genomic: TAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATC-GGCCCATGGGCATGCGTGGAGGAGG
EST: gi|89192895|gb|CI050193.1|CI050193
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89168687|gb|CI038539.1|CI038539
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|87028180|gb|CI111874.1|CI111874
EST:     CGGAGCAGAGAAATATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: CGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86255842|gb|CI066905.1|CI066905
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|86521996|gb|CI162202.1|CI162202
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89170503|gb|CI039780.1|CI039780
EST:     CAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: CAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89192717|gb|CI050015.1|CI050015
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|29671364|gb|CB667639.1|CB667639
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|88831374|gb|CI083768.1|CI083768
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCAATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|29636796|gb|CB641805.1|CB641805
EST:     GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GGGGGAATGGAAGAATCAAATTCTCGGAGCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
EST: gi|89182376|gb|CI113745.1|CI113745
EST:     GCAGAGAAAAATAGACACAGAG                         ACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG
genomic: GCAGAGAAAAATAGACACAGAGgtaatcaaca ... ttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgttttcaccttatgacaacatgaagtgcttattatagcaagttttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGGAGGGGTCCCCGTGGTGGACCCCGTGGACGTGGTTACTATGGGAGGGGGT
                              ttattata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatcaacagttacacattgtgtctttctcgttttcaccttatgacaacatgaagtgcttattatagcaagttttggttgtagACTTTTGGTGATTCTGCAAGGCATCGGCCCATGGGCATGCGTGGAGGAGGGAGGGGTCCCCGTGGTGGACCCCGTGGACGTGGTTACTATGGGAGGGGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA