1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gttagtaaagagcttcaaacctacttagattttaatcataccttcctaaactgcacaagcaattacaataacaatatactgtcttgtataaatagGGGTCTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGGAAATTCCCAGAGAGAATTAAACAGCTGCCACTGGACAGGCACTTTGACCTCAGCAATGTTAAAA
species | Oryza sativa |
transcript | LOC_Os06g13820.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTGCCGGGAATTCGAGGATAAGTTTCTTGCTCATATTACATCTGGCGAG GGGTCTGGTTGGAAAGTTGTTGEST: gi|29622847|gb|CB627858.1|CB627858
genomic: TCTGCCGGGAATTCGAGGATAAGTTTCTTGCTCATATTACATCTGGCGAGgttagtaaag ... gtataaatagGGGTCTGGTTGGAAAGTTGTTG
EST: TCTGCCGGGAATTCGAGGATAAGTTTCTTGCTCATATTACATCTGGCGAG GGGTCTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGGAAATTCCCAGAGAGAEST: gi|58668422|gb|CK057108.1|CK057108
genomic: TCTGCCGGGAATTCGAGGATAAGTTTCTTGCTCATATTACATCTGGCGAGgttagtaaag ... gtataaatagGGGTCTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGGAAATTCCCAGAGAGA
EST: CGGGAATTCGAGGATAAGTTTCTTGCTCATATTACATCTGGCGAG GGGTCTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGGAAATTCCCAGAGAGAEST: gi|29633691|gb|CB638700.1|CB638700
genomic: CGGGAATTCGAGGATAAGTTTCTTGCTCATATTACATCTGGCGAGgttagtaaag ... gtataaatagGGGTCTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGGAAATTCCCAGAGAGA
EST: TCTGCCGGGAATTCGAGGATAAGTTTCTTGCTCATATTACATCTGGCGAG GGGTCTGGTTGGAAAGTTGTTGCAAGTTTTGAAAGGAAATTCCCAGAGAGA
genomic: TCTGCCGGGAATTCGAGGATAAGTTTCTTGCTCATATTACATCTGGCGAGgttagtaaag ... gtataaatagGGGTCTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGGAAATTCCCAGAGAGA
ccttcctaaactgcacaagcaattacaataacaatatactgtcttgtataaatagGGGTCTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGGAAATTCCCAGAGAGAATTAAACAGCTGCCACTGGACAGGCACTTTGACCTCAGCAATGTTAAAA
caataac putative branch site (score: 2)
aattacaataacaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtaaagagcttcaaacctacttagattttaatcataccttcctaaactgcacaagcaattacaataacaatatactgtcttgtataaatagGGGTCTGGTTGGAAAGTTGTTGCAAGTTTTGAAGGGAAATTCCCAGAGAGAATTAAACAGCTGCCACTGGACAGGCACTTTGACCTCAGCAATGTTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC