1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacatctgcagtcaggtttatttggtgtgtgggatgaggtgggggcgttagctccttttctgatggctgacagtcttcttgaattctgtagGTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTTAGGGAATCTCAAACCGAG
species | Oryza sativa |
transcript | LOC_Os06g09370.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAG GTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTTEST: gi|88980643|gb|CI026705.1|CI026705
genomic: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAGgtacatctgc ... aattctgtagGTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTT
EST: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAG GTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTTEST: gi|218483231|gb|FG956163.1|FG956163
genomic: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAGgtacatctgc ... aattctgtagGTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTT
EST: TGCTTGATGAAATAATTGATTATGTGAAATT-CTTCAGCTTCAGGTCAAG GTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTTEST: gi|86498321|gb|CI140954.1|CI140954
genomic: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAGgtacatctgc ... aattctgtagGTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTT
EST: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAG GTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTTEST: gi|5039098|gb|AU071208.1|AU071208
genomic: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAGgtacatctgc ... aattctgtagGTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTT
EST: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAG GTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTTEST: gi|218482847|gb|FG953463.1|FG953463
genomic: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAGgtacatctgc ... aattctgtagGTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTT
EST: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAG GTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTT
genomic: TGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAGgtacatctgc ... aattctgtagGTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTT
aggtgggggcgttagctccttttctgatggctgacagtcttcttgaattctgtagGTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTTAGGGAATCTCAAACCGAG
ggctgac putative branch site (score: 1)
ttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatctgcagtcaggtttatttggtgtgtgggatgaggtgggggcgttagctccttttctgatggctgacagtcttcttgaattctgtagGTATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTTAGGGAATCTCAAACCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG