1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggatgcaccggttcttggccatctttatactaaaagaacatcatatttgcatggtactcctcaaacgcttaactgggtaggttacttgcaaattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACATCGCCAAGGAGACGGCCTCCCAGATCGCGGGCATCCGGCTCTGGATTA
species | Oryza sativa |
transcript | LOC_Os06g06820.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|87018040|gb|CI275854.1|CI275854
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|86497289|gb|CI139922.1|CI139922
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACCATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|88353743|gb|CI634534.1|CI634534
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|86858904|gb|CI275118.1|CI275118
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|87029615|gb|CI257410.1|CI257410
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: AAGAGGACTG-CCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|112786319|gb|EE590521.1|EE590521
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|88344031|gb|CI638766.1|CI638766
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|88306063|gb|CI635067.1|CI635067
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|88569436|gb|CI660611.1|CI660611
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|88573704|gb|CI665473.1|CI665473
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACEST: gi|86863602|gb|CI345279.1|CI345279
genomic: AAGAGGACTGGCCCCCACTGTATGATGTCAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
EST: CAACGTGCTGAACAACAATAAG GTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
genomic: CAACGTGCTGAACAACAATAAGgttcgttctt ... aattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAAC
tttgcatggtactcctcaaacgcttaactgggtaggttacttgcaaattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACATCGCCAAGGAGACGGCCTCCCAGATCGCGGGCATCCGGCTCTGGATTA
gcttaac putative branch site (score: 21)
aaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgcaccggttcttggccatctttatactaaaagaacatcatatttgcatggtactcctcaaacgcttaactgggtaggttacttgcaaattctgcagGTCCCGGTGGCTGCCGCCGTCTACTACGAGGACATGTACGTCAACTTCAACATCGCCAAGGAGACGGCCTCCCAGATCGCGGGCATCCGGCTCTGGATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
ggatgca
- - - - - gttcttg
- - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - -tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgca