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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtattttgtgctggtggcagtctctatcaaatccgtcttctatgttaatcatctcctacctttaacctgaggcacatttcgatatgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATG

Basic information

species Oryza sativa
transcript LOC_Os06g06410.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86483369|gb|CI126002.1|CI126002
EST:     TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG                         CACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
genomic: TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGgtaatgtatt ... tgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
EST: gi|88251122|gb|CI349352.1|CI349352
EST:     TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG                         CACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
genomic: TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGgtaatgtatt ... tgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
EST: gi|88833031|gb|CI369921.1|CI369921
EST:     TCGGCACAGGTACTCGATAGAACGACTCCCTCAAGCTACAACCGGAGGAG                         CACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
genomic: TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGgtaatgtatt ... tgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
EST: gi|88379093|gb|CI681926.1|CI681926
EST:     TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG                         CACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
genomic: TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGgtaatgtatt ... tgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
EST: gi|88970584|gb|CI385274.1|CI385274
EST:     TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG                         CACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
genomic: TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGgtaatgtatt ... tgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
EST: gi|88847535|gb|CI016028.1|CI016028
EST:     TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG                         CACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
genomic: TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGgtaatgtatt ... tgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
EST: gi|88846433|gb|CI373201.1|CI373201
EST:     TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG                         CACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
genomic: TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGgtaatgtatt ... tgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
EST: gi|86502684|gb|CI145317.1|CI145317
EST:     TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG                         CACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
genomic: TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGgtaatgtatt ... tgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
EST: gi|87015953|gb|CI279705.1|CI279705
EST:     TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG                         CACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
genomic: TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGgtaatgtatt ... tgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
EST: gi|86828506|gb|CI278611.1|CI278611
EST:     TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAG                         CACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT
genomic: TCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGgtaatgtatt ... tgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgttaatcatctcctacctttaacctgaggcacatttcgatatgtaatgcagCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATG
                    ctttaac  putative branch site (score: 3)
                                          atatgtaat  TA-rich tract