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...tttctctattatgaggctgtatattgaatgtgttgtttgtacaagaaaagaaaagcatcagtcctgctcctgattgcttttttatctatccaatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG
species | Oryza sativa |
transcript | LOC_Os06g02380.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGEST: gi|7212768|gb|D46006.2|D46006
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGEST: gi|6934900|gb|AU082437.1|AU082437
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGEST: gi|29618035|gb|CB623047.1|CB623047
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGEST: gi|29624254|gb|CB629265.1|CB629265
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGEST: gi|87011216|gb|CI287893.1|CI287893
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGEST: gi|29616041|gb|CB621053.1|CB621053
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGEST: gi|218493375|gb|FG949729.1|FG949729
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGEST: gi|58687616|gb|CK076303.1|CK076303
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAEST: gi|58690567|gb|CK079254.1|CK079254
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAA
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGEST: gi|58602788|gb|CK013316.1|CK013316
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
EST: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAG GCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
genomic: CACAGGAAGAAGTGACTAAGAGGGTTGCACAAATAAAAAATCTCATCGAGgtatgttata ... caatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAG
aaaagaaaagcatcagtcctgctcctgattgcttttttatctatccaatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG
tcctgat putative branch site (score: 3)
cttttttatctatcc putative PPT
ttttttatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctctattatgaggctgtatattgaatgtgttgtttgtacaagaaaagaaaagcatcagtcctgctcctgattgcttttttatctatccaatttgcagGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAATGAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -gctgtat
- - - - - - - - - - - -ttgaatg
- - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - -caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcctg