1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtatcaggatatatatatatatatagcatctcacatcatttcatctgtactgtaatgaaatgaaatattaaaatcatcatgtactctcttcacaccagGGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAGCAAGAACCCCTACGGGTATGGATCGCCGGACAGTAGCAACTGATCCAGC
species | Oryza sativa |
transcript | LOC_Os05g51670.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAA GGCAAAATACGGGGTAGAGGAGATGTGEST: gi|218491365|gb|FG953092.1|FG953092
genomic: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAAgtaagtatca ... ttcacaccagGGCAAAATACGGGGTAGAGGAGATGTG
EST: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAA GGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAGEST: gi|33679559|gb|CF307798.1|CF307798
genomic: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAAgtaagtatca ... ttcacaccagGGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAG
EST: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAA GGCAAAATACGGGGEST: gi|218489340|gb|FG957646.1|FG957646
genomic: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAAgtaagtatca ... ttcacaccagGGCAAAATACGGGG
EST: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAA GGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAGEST: gi|58590991|gb|CF989299.1|CF989299
genomic: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAAgtaagtatca ... ttcacaccagGGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAG
EST: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAA GGCAAAATACGGGGTACGACGGAGATGTGCAGGGACCTGTGGAATTGGGCGEST: gi|33681007|gb|CF309246.1|CF309246
genomic: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAAgtaagtatca ... ttcacaccagGGCAAAATACGGGGTA-GA-GGAGATGTGCAGGGACCTGTGGAATTGGGCG
EST: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAA GGCAAAATACGGGEST: gi|218495689|gb|FG969806.1|FG969806
genomic: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAAgtaagtatca ... ttcacaccagGGCAAAATACGGG
EST: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAA GGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAGEST: gi|88676919|gb|CI731032.1|CI731032
genomic: GAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAAgtaagtatca ... ttcacaccagGGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAG
EST: TCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAA GGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAG
genomic: TCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAAgtaagtatca ... ttcacaccagGGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAG
tctgtactgtaatgaaatgaaatattaaaatcatcatgtactctcttcacaccagGGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAGCAAGAACCCCTACGGGTATGGATCGCCGGACAGTAGCAACTGATCCAGC
tactctcttc CT-rich tract
taatgaaatgaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatcaggatatatatatatatatagcatctcacatcatttcatctgtactgtaatgaaatgaaatattaaaatcatcatgtactctcttcacaccagGGCAAAATACGGGGTAGAGGAGATGTGCAGGGACCTGTGGAATTGGGCGAGCAAGAACCCCTACGGGTATGGATCGCCGGACAGTAGCAACTGATCCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC