1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taaaagcagatgggcttttgcagtaatttaaagcttgtgctactatattctttgtagggagtatttttctgatatttttttaccttatctcacttgctagGTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTCAACTTGGAGCTAATCGTAATCACCTTAGTGTCAGGTAGATAGTTGTTTC
species | Oryza sativa |
transcript | LOC_Os05g51550.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTCACTTTTACAGAGCAACCCTTTTTTGAAATCTAAAGTTATTGTACAG GTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTCEST: gi|86430202|gb|CI082625.1|CI082625
genomic: GGTCACTTTTACAGAGCAACCCTTTTTTGAAATCTAAAGTTATTGTACAGgtatgcactt ... cacttgctagGTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTC
EST: GTCACTTTTACAGAGCAACCCNNNNNNNGAAATCTAAAGTTATTGTACAG GTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTCEST: gi|88845246|gb|CI084171.1|CI084171
genomic: GTCACTTTTACAGAGCAACCC-TTTTTTGAAATCTAAAGTTATTGTACAGgtatgcactt ... cacttgctagGTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTC
EST: GGTCACTTTTACAGAGCAACCCTTTTTTGAAATCTAAAGTTATTGTACAG GTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTCEST: gi|29687436|gb|CB683711.1|CB683711
genomic: GGTCACTTTTACAGAGCAACCCTTTTTTGAAATCTAAAGTTATTGTACAGgtatgcactt ... cacttgctagGTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTC
EST: GGTCACTTTTACAGAGCAACCCTTTTTTGAAATCTAAAGTTATTGTACAG GTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTC
genomic: GGTCACTTTTACAGAGCAACCCTTTTTTGAAATCTAAAGTTATTGTACAGgtatgcactt ... cacttgctagGTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTC
tattctttgtagggagtatttttctgatatttttttaccttatctcacttgctagGTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTCAACTTGGAGCTAATCGTAATCACCTTAGTGTCAGGTAGATAGTTGTTTC
atctcac putative branch site (score: 20)
tttttttaccttatct CT-rich tract
tatttttctgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaagcagatgggcttttgcagtaatttaaagcttgtgctactatattctttgtagggagtatttttctgatatttttttaccttatctcacttgctagGTGTCAGTGACTCCGTAACATGGAAGCTGCGGATGATAGTGATGTTAATTCAACTTGGAGCTAATCGTAATCACCTTAGTGTCAGGTAGATAGTTGTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - -gcagatg
- - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - -tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgat